Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq25099 154 3e-32 seq16702 149 1e-30 seq20348 145 1e-29 seq24486 140 6e-28 >seq25099 Length=83779 Score = 154 bits (170), Expect = 3e-32 Identities = 160/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | || || || ||||| || || || |||||||| || |||||||||| Sbjct 21189 TACCGCCTCGGAGTCGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAG 21248 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || || || || || || || ||||| || | || |||||||||| Sbjct 21249 AAAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAG 21308 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGC--TTTTACATTTTCAATCGTATCATTAGGTTC 82759 | ||||||||||||||||| ||||| || || ||||| ||||| |||||| |||||| Sbjct 21309 GGATTCCTTCCTTATCTTGGATCTTGGCCNCTTCACATTCTCAATGGTATCAGAAGGTTC 21368 Query 82760 TACTTCCAAAGTTATCGTCTTGCCTGTCA 82788 |||||||| || || ||||| || |||| Sbjct 21369 TACTTCCAGGGTGATGGTCTTTCCGGTCA 21397 Score = 87.8 bits (96), Expect = 4e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | ||||| || ||||| |||||||| || ||||| |||||||| || || Sbjct 20930 ACCTCCGCGGAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGA 20989 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | | ||| || || ||||| || ||||||||||| || | || |||||||| || Sbjct 20990 CAAAGTACGACCATCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCTGGGGG 21049 Query 82703 TAT 82705 || Sbjct 21050 GAT 21052 >seq16702 Length=433992 Score = 149 bits (164), Expect = 1e-30 Identities = 216/305 (71%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 198331 ATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTT 198390 ||||| || ||||| | ||||| | ||| || | | || || ||||||||| | | Sbjct 196485 ATGACGACCTTTGGAACTCGGCGCAATTGCAGCTGGTCAATGAGGGCAAAATGCATGGAT 196544 Query 198391 TTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTT 198450 || | |||||||| ||||| || |||||||||||||||||| |||||| || | || | Sbjct 196545 TTCTGAGAATGTATTGGGCCAAGAAGATACTTGAATGGACAGAAACACCAGAGCAGGCGT 196604 Query 198451 TGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAACGGAT 198510 || ||||| || | || ||| | || ||| || || ||| ||||| || || | Sbjct 196605 TGGAGTATAGCATATTGCTGAACGACAAATACAGTCTGGATGGCCGTGATCCCAATGGTT 196664 Query 198511 ACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTA 198570 | || || || ||||||||| | | || | |||||| || ||||| || | | | Sbjct 196665 ATGTGGGCTGCATGTGGTCTGTCGGGGGTATCCATGATAACGCATGGAAGGAGCGTGCCA 196724 Query 198571 TATTTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTG 198630 |||| || ||||| | |||||||| ||| | || | ||| ||||||||||||| || Sbjct 196725 TATTCGGCAAGATTCGCTATATGAACTATCAAGGATGTAAACGAAAATTTGATGTTAATG 196784 Query 198631 CATTT 198635 ||||| Sbjct 196785 CATTT 196789 >seq20348 Length=30608 Score = 145 bits (160), Expect = 1e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||||| ||||| ||||| || ||||| ||||| || ||| | | || Sbjct 12907 CGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCA 12848 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| | ||| || || |||||||| | | |||||||||||||| |||||||| || Sbjct 12847 TCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTG 12788 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || |||||||| ||||| |||||||| || ||||| ||||| || || | ||| || Sbjct 12787 TCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATG 12728 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | || || || || || ||||| Sbjct 12727 GTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq24486 Length=213816 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || ||||||| || || || ||||| || || || || | Sbjct 88373 TACCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGG 88314 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || || || ||||| ||||| || | ||||||||||| | Sbjct 88313 ACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGG 88254 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| || || ||||| || || ||||| || || || ||| || || | Sbjct 88253 GAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCA 88194 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || |||||||| ||||| || || || || || |||||| Sbjct 88193 CCTCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCATT 88144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981495675614006