Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq25128 295 6e-75 seq24486 123 2e-23 seq26131 116 4e-21 seq25099 100 3e-16 >seq25128 Length=30855 Score = 295 bits (326), Expect = 6e-75 Identities = 1189/1847 (64%), Gaps = 58/1847 (3%) Strand=Plus/Minus Query 147938 GGCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCG--CCATGCG 147995 |||||| || | ||||||||||| ||||| || ||||||||||| ||| ||| | | Sbjct 20170 GGCAGCTGGCTTTGTGCGCAGATAATACATTCCTGTCTTGAGGCC--TGCCTTCCACGAG 20113 Query 147996 TAGTCGTGCACCGACGACATGAGCGTG---TACGTCGGGTGCGGCA-CAAACAGATTAAA 148051 || || | || | | | | || || || |||| ||||| | | || || Sbjct 20112 AAGAAATGAATGGATG---TTAACTTGCCGTA-GTTGGGTTCGGCAACGTGAATGTTGAA 20057 Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111 || || ||||||||||| || || || || ||||| ||||| | ||| | ||| | Sbjct 20056 TGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCCATCTTGATGGTTGACTTCAC 19997 Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171 | || |||||| | || ||||| || | | | | |||||| |||||| Sbjct 19996 CGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACTTCCTGAGGAATGGATTCGATGTT 19937 Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231 || | ||||| || |||| || ||||| ||| || || ||| | || Sbjct 19936 TTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCATGTCATCATCCCATAAATCCAG 19877 Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291 ||| | | || | || || ||||| ||||| | ||||| |||| | ||||| Sbjct 19876 TTCGGTTAAATCCCGCAACAAATGATGATTTACCACATTGAACTCTCCGGACAAAACGCG 19817 Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 || || | ||| ||| |||| ||||| ||||| || || |||| ||||| || Sbjct 19816 CCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCATGATCTGGGC 19757 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 || | |||||||||||| || || ||||||||||| | | || | | ||| || Sbjct 19756 AGTAGATGCCGTGGGCATTGGAGCCACAAGCAGCGAGTTTCTAACGCCATGCTCTTTGAT 19697 Query 148412 TTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 ||| || ||||| | ||| ||||| || | |||||| || |||||| ||||| Sbjct 19696 TTTCAATTTTAGAGCAGTCCAATCCCAAAGGTTTGTGGGTGTCTTGTCCCACATATCGTA 19637 Query 148472 CTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGC 148531 ||||||||| || ||| | || | || |||| | || || |||| | Sbjct 19636 CTGCAGAATTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTG 19577 Query 148532 CGCCAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTT 148591 ||||| || || || ||||| || || || ||||| || || ||| || ||| || Sbjct 19576 AGCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATT 19517 Query 148592 GAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAG 148651 ||||| | || || || || || || | |||| | | | || |||||||||| Sbjct 19516 GAGCAATACGGCTTTGTCACTCTCATAGGGAAAGCGCATCAGAATTAAGGCGTCGGCAAA 19457 Query 148652 GCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-A 148710 |||||| ||||| | ||||||||| || ||| | | ||||| || ||| | | Sbjct 19456 GCCCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGC-CTCGGGCA 19398 Query 148711 GCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTC 148770 ||||||||| ||| || ||||| |||| | ||| | || || |||| | Sbjct 19397 GCGGATAGTAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTT 19338 Query 148771 TGCGCAGCAATTCAAAATCGTACTTGTCATCTACGATG-------CATCGGTTCACGGCG 148823 || | |||||| | ||| ||| || | ||| |||| ||| Sbjct 19337 CCTTTAGTTTCTTGAAATCGAA--TGTTTTCTCTGAAGTCACAAACAT--ATTCAAGGCT 19282 Query 148824 ATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCG 148883 || || || | |||||| ||||| ||||||| || || || || || || |||| | Sbjct 19281 ATCGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCGGTG 19222 Query 148884 CACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCG 148943 || || |||||||||||||| ||| || |||| ||||||||||| |||||||| | | Sbjct 19221 CAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAG 19162 Query 148944 TCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATG---AACCGA 149000 || ||| | ||||||||||| |||||| || || || | ||| || ||| ||| | Sbjct 19161 TCTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAA 19102 Query 149001 TGCAG---GTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTA 149057 | || || || | ||| ||| ||||||||| ||| || ||| Sbjct 19101 AG-AGTTTGTGCTTTAATCACACGATTTGC-----GCGACCCTCGCTCTCATACTTTGTA 19048 Query 149058 TACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCAC 149117 |||||| ||| || | || || | || || | ||||| |||||||| || ||| Sbjct 19047 TACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACAC 18988 Query 149118 ATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGC 149177 | |||||||| | | | || | ||| |||||||||||||||||||| | ||| | Sbjct 18987 AACAGCGACCAATCCTCATTGGCTTCCACACGCTTCATAAACAGATCGGGTATCCACAAG 18928 Query 149178 GCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGT-TGAG 149236 ||||| | ||| || || || || ||||| |||| |||| |||| || Sbjct 18927 GCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAG 18868 Query 149237 CACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTT 149296 || | || || || | ||||| || || | ||| | || | ||||| ||||| Sbjct 18867 AACTC-AAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGCCGCTT 18809 Query 149297 GCCG---CCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAAT 149353 |||| || || ||||| | || ||| || |||||||||| | ||| || | | Sbjct 18808 GCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAA 18749 Query 149354 GCCACTGGCAGTGCCGTTAGTAGAGCTAATGCGA-CTGCCGCGCGCTCGCACTTTGTGCA 149412 ||| | | |||||| ||||| | || ||| |||| || || | |||| Sbjct 18748 ACCATTTGAAGTGCCATTAGTGCCACAGAT-CGAGGTGCCCTTGGCACGAATACAATGCA 18690 Query 149413 CGTTGACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGT 149472 | |||| || ||||| || || | || ||||| || || | ||| | | | Sbjct 18689 CATTGAGTCCAATGCCACCAGCGGATTTGGAGATCATTGCACACTGCTCGACGGACTTGA 18630 Query 149473 AGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAA 149532 | ||||| |||||| ||| ||| || || || || ||||| |||| || ||| Sbjct 18629 AAATGCCTTCGATGGAATCGGAAACCATTGTTAGAAGGAAACACGATGACATCTGGGGAC 18570 Query 149533 AACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATA--TTTCTGGCTCAT 149590 | ||| | || || || | || || || || |||||||| ||| | | Sbjct 18569 GATTGGTGGCAGCAGCAAATAGCGTTGGCGATGCATGCGTAAAATAGCGTTCCG--ATAA 18512 Query 149591 CATCTCGTACGACTCGAGCACGCGG--TCCATGTCATCGCCATGGATGCCTATGGCGACG 149648 || | ||| | ||||| || |||| || ||||| ||||||||||| || || || || Sbjct 18511 CAGATTGTAAGTCTCGA-CA-GCGGAATCGATGTCTTCGCCATGGATTCCAATCGCCACT 18454 Query 149649 CGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCA---ATTTTGAGCAAGTAG 149705 | ||||||||| |||||||| || || || | |||| ||| || || ||||| || Sbjct 18453 CTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTG---CCATTGATCTTTAGCAAATAC 18397 Query 149706 CCGTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCG 149752 || || |||||| ||||||| || |||||| |||| || || Sbjct 18396 GAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATCACG 18350 >seq24486 Length=213816 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| || ||| | | | ||||| || Sbjct 88350 AAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCA-TCCTCCAG 88292 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | || || ||||| || || || || || || |||||||| ||| Sbjct 88291 CTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATTCCCTCCTTGTCCTGGAT 88232 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||| | ||||||||| || | ||||| ||| ||||| Sbjct 88231 CTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACCTCCAAGGTGATGGTCTTGCC 88172 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| ||||| || ||||| Sbjct 88171 AGTCAAGGTTTTCACGAAGATTTGCAT 88145 >seq26131 Length=1848992 Score = 116 bits (128), Expect = 4e-21 Identities = 233/345 (68%), Gaps = 3/345 (1%) Strand=Plus/Minus Query 116458 CTGCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGC 116517 ||| ||| || ||||| || ||||||||||| ||||||||||||| || |||||| ||| Sbjct 1717579 CTGGCGCAAGGTCTGCATGGATTCCACGTGCATGAGTTTGGCGACAACACCAACGGATGC 1717520 Query 116518 ACCTCCGCCGGCGAACACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCC 116577 | || | || || ||||||||| | |||| ||||| || |||| | || Sbjct 1717519 ATGTCATCAGGACCCCATTTCAACCCCCACAAGAAGGAGCACGGTGCACCCACAGACGGT 1717460 Query 116578 GTTCGTCACGTCGGTGACCTGGGCAACATTGAGGCCAAAGTGTCCAACGCGCTCACTGCC 116637 | || ||| | || || |||||||||| ||||| | | ||| | |||||| Sbjct 1717459 GAGCGCCACTTGGGCGATTTGGGCAACATCACGGCCAGCG---GCGACGGTCCCACTGCA 1717403 Query 116638 GTGGACAAGATCGACAACGTGATGACGCTGTTCGGCGAGTACAGCGTGCTCGGTCGCAGT 116697 || |||| | ||||| | ||| || || || |||||| ||||| | | || |||| | Sbjct 1717402 GTCGACATCACCGACAGCCAGATAACTCTCTTTGGCGAGAACAGCATCATTGGACGCACT 1717343 Query 116698 CTCGTCGTGCACACCAACGCCGACGACCTGGGACTGGGCCAGCACCCGCTTAGCAAAACC 116757 | || || || || | ||||| || || || ||| ||| | | ||||| || Sbjct 1717342 GTTGTGGTCCATGCCGATGCCGATGATCTTGGCAAGGGTGGCCACGAGTTGAGCAAGACA 1717283 Query 116758 ACCGGCAACTCGGGCGGCCGCCTCGGCTGCGGCATTATCGGCATT 116802 || ||||| | |||| ||| | || ||||| | || || ||| Sbjct 1717282 ACTGGCAATGCTGGCGCACGCATTGGTTGCGGTGTGATTGGTATT 1717238 >seq25099 Length=83779 Score = 100 bits (110), Expect = 3e-16 Identities = 137/188 (73%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||||||||| || || ||||| | ||| ||| | ||||| || Sbjct 21212 AAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAGAAAGGGTGCGACCA-TCCTCCAG 21270 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| | ||||| |||||||| || |||||||| |||||||| || ||| Sbjct 21271 CTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGGAT 21330 Query 133574 CTT--TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| ||| | | ||||| || || | || || || || | ||||| ||| || Sbjct 21331 CTTGGCCNCTTCACATTCTCAATGGTATCAGAAGGTTCTACTTCCAGGGTGATGGTCTTT 21390 Query 133632 CCGGTCAG 133639 |||||||| Sbjct 21391 CCGGTCAG 21398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483261549102960