Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq25128 105 2e-17 seq19105 102 2e-16 >seq25128 Length=30855 Score = 105 bits (116), Expect = 2e-17 Identities = 414/640 (65%), Gaps = 21/640 (3%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||||||||| ||||| || || || ||| | ||||| || |||||||| | ||| Sbjct 18366 ACTATTTTGGCTTCAAGACCCTCGAGCGTTCGTATTTGCTAAAGATCAATGGCAAAATCG 18425 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 |||||||| || |||||| | | | || |||||||| || ||||| | || || Sbjct 18426 CCGAACGTCCGCAGCACATGCTGATGAGAGTGGCGATTGGAATCCATGGCGAAGACATCG 18485 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATT-----CATGCTAC 110476 | | | | | || ||| || | ||| ||| |||||| ||||| | Sbjct 18486 ATTCCGCTGTCGAGACTTACAATCTGTTATCG-----GAACGCTATTTTACGCATGCATC 18540 Query 110477 TCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGG 110536 || || |||||| || | || ||| | || || | || || || |||||| Sbjct 18541 GCCAACGCTATTTGCTGCTGCCACCAATCGTCCCCAGATGTCATCGTGTTTCCTTCTAAC 18600 Query 110537 AATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTT 110595 ||| ||||| || ||||| |||| | | | | | || | ||| | || | Sbjct 18601 AATGGTTTCCGATTCCATCGAAGGCATTT-TCAAGTCCGTCGAGCAGTGTGCAATGATCT 18659 Query 110596 CTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATA 110655 | ||| | |||| || ||||| | | || ||| |||||| | || || | | Sbjct 18660 CCAAATCCGCTGGTGGCATTGGACTCAATGTGCATTGTATTCGTGCCAAGGGCACCTCGA 18719 Query 110656 TC-GCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGAC 110714 || | || | || || |||||| ||| | || || ||| | ||||| || || | Sbjct 18720 TCTGTGGCA-CTAATGGCACTTCAAATGGTTTGGTGCCCATGCTCAGAGTGTTTAATAAT 18778 Query 110715 ACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTC 110771 || ||||| |||||||||| ||| | ||| | ||||| || || || Sbjct 18779 GTGGCTCGTTATGTCGATCAAGGTGGCGGCAAGCGGCCAGGCGCTTTTGCCATTTACCTG 18838 Query 110772 GAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCA-AGGATTTGA 110830 |||||||||||||| ||||| ||||| ||||| | || || ||| | || || || Sbjct 18839 GAACCTTGGCATTCCGATATCTTTGAGTTCTT-GGACCTCAAAAAGAACACGGGCAAGGA 18897 Query 110831 AGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACG 110890 ||| || ||||| |||||| | || || || ||||||| | ||| | || ||||| || Sbjct 18898 AGAGCACAGAGCTCGTGATCTCTTCTACGCCTTGTGGATACCCGATCTGTTTATGAAGCG 18957 Query 110891 TGTTCAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCA 110929 ||| ||| |||| | || ||||| || |||||||||| Sbjct 18958 TGTGGAAGCCAATGAGGAT-TGGTCGCTGTTGTGTCCTCA 18996 >seq19105 Length=237168 Score = 102 bits (112), Expect = 2e-16 Identities = 279/418 (67%), Gaps = 16/418 (4%) Strand=Plus/Minus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAG---GTGCTTTCTGTGCTATCTTTTGG 131923 ||||||||| ||||||||| || ||||| ||| | ||||| | | ||||| ||| Sbjct 37055 GCTTTTGCTGCTGTTGAAGGCATCTTCTT--CAGTGGGAGCTTTGCATCC-ATCTTCTGG 36999 Query 131924 CTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGAT 131983 || |||||||||||| | ||||||||||| |||| ||||| |||| ||||| | ||| Sbjct 36998 CTGAAGAAGCGTGGACTTATGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGAT 36939 Query 131984 GAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG-ATAAACTTGA 132042 |||| ||||| ||| ||||| | | || | | || ||||| || | | | Sbjct 36938 GAAGGTCTGCATTGTGACTTTGCGGTGCTTATGT-TCCAACATTTGGTGCAGCGGCCTAG 36880 Query 132043 T---GAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTAT 132099 | ||| | ||| || | |||| || || || ||| ||| ||||||| | Sbjct 36879 TCGGGAACGCATCATT---GAAATCATAACGGATGCTGTGACTATTGAGCAGGAGTTCCT 36823 Query 132100 TACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCT-ATGAAGGAGTACA 132158 || || || |||| ||| |||||||| ||||| || |||| ||| || || | Sbjct 36822 CACCGATGCGCTGCCCGTCAACTTGATTGGCATGAACTGTG-CTCTGATGTCCGAATATA 36764 Query 132159 TTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCC 132218 | || || || |||||||| || | | ||||| ||||||||| ||||| Sbjct 36763 TCGAGTTTGTCGCTGATCGCCTATTGGTTGAGCTTGGCGTGGGCAAGATTTACAACACAA 36704 Query 132219 AAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGA 132276 | || || | | | |||||| || || | || || ||||| ||||||||||| Sbjct 36703 AGAATCCATTCTCGTTCATGGAGATGATCTCTTTGGATGGCAAAACCAACTTCTTCGA 36646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186412060048194