Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq20348 104 6e-17 seq25099 95.1 3e-14 >seq20348 Length=30608 Score = 104 bits (114), Expect = 6e-17 Identities = 138/186 (74%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || |||||| | || || ||| || || || ||||| Sbjct 12708 AAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGATACCATCGAAAAT 12767 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA-AGACTT--AT 206300 || ||||| || |||||| || |||||||||||| || || |||| || || || Sbjct 12768 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGA---TCAACAGCGTTTGAT 12823 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||| ||||| ||||| ||||||||||| | ||| | |||||||||| |||| ||||| Sbjct 12824 CTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAATATCCAAAAAGA 12883 Query 206361 GTCTAC 206366 |||||| Sbjct 12884 GTCTAC 12889 >seq25099 Length=83779 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || ||||| | ||| | ||| || || ||||| ||||||| ||||||||| | |||||| Sbjct 22495 CGGAGTCTGAGAACCAAGTGCAGTGTTGACTCCTTCTGGATATTATAGTCGGACAAAGTG 22554 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| ||||||||||| || ||||||||||| || || ||| Sbjct 22555 CGACCATCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGA 22599 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||| || | ||||||||||||||| ||||||| ||||||||| | |||||| Sbjct 20937 CGGAGACGCAAGACCAAGTGAAGAGTAGACTCCTTCTGGATATTATAGTCGGACAAAGTA 20996 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| ||||| ||||| || || ||||| || || || ||| Sbjct 20997 CGACCATCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGA 21041 Score = 86.0 bits (94), Expect = 1e-11 Identities = 141/203 (69%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 || || ||||| || ||||| ||||||| ||| |||||| || | || || ||| Sbjct 21398 CTGACCGGAAAGACCATCACCCTGGAAGTAGAACCTTCTGATACCATTGAGAATGTGAAG 21339 Query 206251 CAA--AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCG 206308 ||||| ||||| || |||||||| || || || | || |||||||||| Sbjct 21338 NGGCCAAGATCCAAGATAAGGAAGGAATCCCTCCAGATCAGCAGCGTCTCATCTTCGCCG 21279 Query 206309 GAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTC 206368 | |||||| |||| ||||| | || | | ||||| ||| | ||||||||||| || | Sbjct 21278 GCAAGCAGCTGGAGGATGGTCGCACCCTTTCTGATTATAACATTCAGAAAGAGTCGACCC 21219 Query 206369 TTCACCTTGTTTTGAGACTTCGA 206391 ||||| | || | |||| ||| Sbjct 21218 TTCACTTGGTCCTCCGACTCCGA 21196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181421745650034