Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq25128 316 2e-81 seq26131 127 2e-24 seq20348 98.7 9e-16 seq19105 95.1 1e-14 >seq25128 Length=30855 Score = 316 bits (350), Expect = 2e-81 Identities = 1201/1856 (65%), Gaps = 78/1856 (4%) Strand=Plus/Minus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || || || |||||||||| ||||||||| || || |||||||| ||||||| Sbjct 20169 GCAGCTGGCTTTGTGCGCAGATAATACATTCCTGTCTTGAGGCCTGCCTTCCACGAGAAG 20110 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691 ||||| || || | || |||| | || || || ||| || || || ||||| Sbjct 20109 AAATGAATGGATGTTAACTTGCCGTAGTTGGGTTCGGCAACGTGAATGTTGAATGATTGA 20050 Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTCA-- 146749 || || || || ||||| ||| || || ||||||| | ||| ||| ||||| Sbjct 20049 CTCTGGTCAATAAAAGCACCGCGATCAGCTGCCATCT---TGATGG---TTGACTTCACC 19996 Query 146750 ----TTTCCCAAGCGGTTTTGTACAGC-CCCTTAACGCTATCTG--GAATACCTTCAATG 146802 ||||||| |||||||||| || ||| || || ||| |||| ||| ||| Sbjct 19995 GAGATTTCCCAGACGGTTTTGTAAAGATCCCGTA---CTTCCTGAGGAATGGATTCGATG 19939 Query 146803 TTTTGAATAGAGCC-CTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGG--CGTGTAAAG 146858 ||||| || ||||| | || |||| || || ||| | || || | |||| Sbjct 19938 TTTTGTATGGAGCCACGACTG-GCAATGATT-TGATTCTTCATGTCATCATCCCATAAAT 19881 Query 146859 ---GTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGC 146915 ||| ||| ||| | ||| |||| ||||| ||||| | ||||| || | Sbjct 19880 CCAGTTCGGTTAAATCCCG----CAAC-AAATGATGATTTACCACATTGAACTCTCCGGA 19826 Query 146916 CAGCACACGTCTGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAA 146975 || || || ||| || | || ||| | |||||||| ||||||||||| || | Sbjct 19825 CAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCAT 19766 Query 146976 TATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTA 147035 || ||||| || | ||| || ||||| ||||| | || || |||| | || | Sbjct 19765 GATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCACAAGCAGCGAGTTTCTAACGCCATG 19706 Query 147036 CGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCA 147095 | | ||| || || | || ||| ||||| | | ||| ||| || ||| Sbjct 19705 CTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGTTTGTGGGTGTCTTGTCCCA 19646 Query 147096 CATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCC 147155 ||| |||||||| || | ||| || | |||| |||||| | || ||| || Sbjct 19645 CATATCGTACTGCAGAATTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACC 19586 Query 147156 GTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGAT 147215 ||| || |||| ||||| || ||||| || || |||||||| ||||||||| ||| Sbjct 19585 GTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGAT 19526 Query 147216 TTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGC 147275 || | || || | |||| || ||||| || || | |||| || | ||||| Sbjct 19525 CTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAGCGCATCAGAATTAAGGC 19466 Query 147276 ATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG-CTT---TTCG-TTGCTGCGC 147330 ||||| || ||||| | || | ||| || || ||||| ||| || | || || || Sbjct 19465 GTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGC 19406 Query 147331 TTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACA 147390 ||| || || ||||||| ||| |||||| || ||||| | || | ||| Sbjct 19405 CTCGGGCA-GC----GGATAGTAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACA 19351 Query 147391 ACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTC-GACACGTACGCA 147449 |||||| | | || ||||||| |||||| | || ||| | ||| || | Sbjct 19350 GTTTTAGTAACTTCCTTTAGTTTCTTGAAATCGAATGTTTTCTCTGAAGTCACAAACATA 19291 Query 147450 TTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTG--TAC 147507 || || ||| || || |||| |||||||||||| |||| |||| || || | || Sbjct 19290 TT----CAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATCGG-GT-GCCGAATAT 19237 Query 147508 TGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTT 147567 | || ||||||| ||| |||||||||||||| ||| || | ||| ||||||||||| Sbjct 19236 TCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTC 19177 Query 147568 TTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCA 147627 |||| ||||| | ||||||||||||||||||||| ||| ||||| ||||| | |||| Sbjct 19176 TTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCA 19117 Query 147628 ACGAT---AAACCTATGCAG---GTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCG 147681 || || | ||| | | || || || || ||| ||| ||| |||||| Sbjct 19116 ACAATGGCATACCAAAG-AGTTTGTGCTTTAATCACACGATTTGC-----GCGACCCTCG 19063 Query 147682 TTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGA 147741 | || ||| |||| | |||||| || || || | || | | ||||||| Sbjct 19062 CTCTCATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGA 19003 Query 147742 CACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGA 147801 |||| || ||||||| ||||||||| || | || | || || |||||||||| Sbjct 19002 CACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCTTCCACACGCTTCATAAACAGA 18943 Query 147802 TCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCGGCGCCCATGTTG 147861 || || | ||||| ||||| | ||||| || ||| || || || |||| |||| Sbjct 18942 TCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTTCCTTGCCCGTGTTC 18883 Query 147862 CGTTTCAAAT-TAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAG 147920 ||| | | ||| || | | |||| |||| ||||| ||||| | ||| | ||| | Sbjct 18882 TTTTTGAGGTCCAAGAACTC-AAAGATATCGGAATGCCAAGGTTCCAGGTAAATGGCAAA 18824 Query 147921 CGCACCTTTACGCTTTCCG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCG 147977 || ||| ||||| ||| || || ||||||| || ||| || |||||||| | Sbjct 18823 AGCGCCTGGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCACATTATTAAACACTCT 18764 Query 147978 CACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGC 148037 | |||||| ||| || | | |||||| || ||| | |||| | |||| ||| Sbjct 18763 GAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCGAGGTGCCCTTGGC 18704 Query 148038 TCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATC 148097 || | ||||| || | |||||||| || || | || || || || || | Sbjct 18703 ACGAATACAATGCACATTGAGTCCAATGCCACCAGCGGATTTGGAGATCATTGCACACTG 18644 Query 148098 GCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCA-----AGCAAAAAA 148152 | | | | || | ||||| |||||| ||| || ||| || | ||| Sbjct 18643 CTCGACGGACTTGAAAATGCCTTCGATGGAATCG-----GAAACCATTGTTAGAAGGAAA 18589 Query 148153 CACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTA 148212 ||||| |||| || ||| || | || | || || || || || |||||| Sbjct 18588 CACGATGACATCTGGGGACGATTGGTGGCAGCAGCAAATAGCGTTGGCGATGCATGCGTA 18529 Query 148213 AACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGA 148272 || | || | || || ||||| | |||| |||||||| ||||| || Sbjct 18528 AAATAGCGTTCCGATAACAGATTGTAAGTCTCGACAGCGGAATCGATGTCTTCGCCATGG 18469 Query 148273 ATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATC 148332 || || | ||| || | ||| ||||||||||| || |||||||| | || |||||| Sbjct 18468 ATTCCAATCGCCACTCTCATCAGCATGTGCTGCGGACGTTCGGCGATTTTGCCATTGATC 18409 Query 148333 TTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATC 148388 || || | ||| | |||||||| ||| | ||||| || ||||| ||||||| Sbjct 18408 TTTAGCAAATACGAACGCTCGAGGGTCTTGAAGCCAAAATAGTTGTAGCCAAAATC 18353 >seq26131 Length=1848992 Score = 127 bits (140), Expect = 2e-24 Identities = 235/339 (69%), Gaps = 7/339 (2%) Strand=Plus/Plus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 ||||||| || | ||||| || | ||| |||| | ||||| || |||||||||| | Sbjct 1717237 CAATACCAATCACACCGCAACCAATGCGTGCGCCAGCATTGCCAGTTGTCTTGCTCAACT 1717296 Query 51601 GATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGA 51660 ||| | ||| ||||| ||| | || || ||||| | | |||| |||| || Sbjct 1717297 CGTGGCCACCCTTGCCAAGATCATCGGCATCGGCATGGACCACAACAGTGCGTCCAATGA 1717356 Query 51661 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGT 51720 ||| || ||||| || || || ||| | ||||| | |||| ||| | ||| | ||| Sbjct 1717357 TGCTGTTCTCGCCAAAGAGAGTTATCTGGCTGTCGGTGATGTCGACTGCAGTGGGACCGT 1717416 Query 51721 TGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGT-TCGGA 51779 | | | ||| || |||||||| ||||| | ||||||| || ||| | | || Sbjct 1717417 CGC---CGCTGGCCGTGATGTTGCCCAAATCGCCCAAGTGGCGC-TCACCGTCTGTGGGT 1717472 Query 51780 GCGCCGTGGTCGCTGCCGGTGGGG-TTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCT 51838 || ||||| || || | |||||| ||||| || || | ||| |||| |||||| | Sbjct 1717473 GCACCGTGCTC-CTTCTTGTGGGGGTTGAAATGGGGTCCTGATGACATGCATCCGTTGGT 1717531 Query 51839 GGTGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCC 51877 | ||||||| || || |||||||||||||| ||||| || Sbjct 1717532 GTTGTCGCCAAACTCATGCACGTGGAATCCATGCAGACC 1717570 >seq20348 Length=30608 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||||||||| || ||||| ||| | || ||| |||||| | || || |||| | Sbjct 12886 GACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCA 12827 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||||||||||||||| || |||||||| || ||| || ||| | Sbjct 12826 AAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 12767 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | ||| || || || | || | || ||||| || || ||||| Sbjct 12766 TTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTA 12707 Query 132110 ATGAAAATCTGCAT 132123 | ||| || ||||| Sbjct 12706 ACGAAGATTTGCAT 12693 >seq19105 Length=237168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 249/368 (68%), Gaps = 13/368 (4%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 ||||| || || || ||| ||||| |||||||| ||||| ||||| || || ||| Sbjct 36980 ATGCCTGGACTTACATTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGAC 36921 Query 46974 TTTGCG-TGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACG-ATCC 47031 |||||| || | | || ||| | | ||| | | | | | |||| ||| ||| Sbjct 36920 TTTGCGGTGCTTATGTTCCAACATTTG-GTGCA-GCGGCCT---AGTCGGGAACGCATCA 36866 Query 47032 TGAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCG 47091 | || | | ||| || |||| || || ||||||| | || | |||||||||| Sbjct 36865 TTGAAATCATAACGGATGCTGTGACTATTGAGCAGGAGTTCCTCACCGATGCGCTGCCCG 36806 Query 47092 TCGCCTTGCTGGGCATGAAC-GCACAGTCT-ATGTGCGAATATATTGAGTTTGTGGCGGA 47149 || |||| | ||||||||| | | ||| |||| ||||||||| |||||||| || || Sbjct 36805 TCAACTTGATTGGCATGAACTGTGC--TCTGATGTCCGAATATATCGAGTTTGTCGCTGA 36748 Query 47150 TCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTT-TAATGCTCGTAATCCGTTTGAGT 47208 ||| || ||||| |||| || | | || |||| || | ||||| || || Sbjct 36747 TCGCCTATTGGTTGAGCTTGG-CGTGGGCAAGATTTACAACACAAAGAATCCATTCTCGT 36689 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGT 47268 | ||| | | || || | || ||||||||||| || |||||||| ||| || || | Sbjct 36688 TCATGGAGATGATCTCTTTGGATGGCAAAACCAACTTCTTCGAGAAGAAAGTGGGTGAAT 36629 Query 47269 ATAAGCGC 47276 || ||||| Sbjct 36628 ATCAGCGC 36621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476454192355440