Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1005 98.7 1e-14 seq25128 86.0 9e-11 >seq1005 Length=48977 Score = 98.7 bits (108), Expect = 1e-14 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1818069 ATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACG 1818128 ||| | |||||||| || ||||||| |||||||| | | | || | |||||| Sbjct 12051 ATGTTGAAGGGCGTAACCAGCTCGGGGAAGGTGAGATTTTGTGCTATGGAACGCGGCACG 11992 Query 1818129 CCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTG 1818188 ||||||| || || | | ||| ||||| ||||||| | || |||| |||| | Sbjct 11991 CCCACCTGATCGATTCGCAAATTGGGATCGGGTGTGATGACAGTACGTGCGGAGAAGTCG 11932 Query 1818189 ACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACG 1818248 || || |||||||| |||| || || || | |||||||||||||||| ||| || | Sbjct 11931 ACACGTTTGCCCATCAAATTACCACGAATGCGACCCTCCTTGCCCTTGAGACGCGCCTTG 11872 Query 1818249 AGGCCCTTGGTGGGCTTGCCCGAC 1818272 | ||||| ||| ||||||||| Sbjct 11871 ATCGCCTTGAGGGGTTTGCCCGAC 11848 >seq25128 Length=30855 Score = 86.0 bits (94), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 6/159 (4%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||||||||||| ||||| |||||| ||||||||||| ||||| |||| || Sbjct 18800 GGTGGCGGCAAGCGGCCAGGCGCTTTTGCCATTTACCTGGAACCTTGGCATTCCGATATC 18859 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | ||||||||||||||||| ||||||| | ||| || | || || Sbjct 18860 TTTGAGTTCTTGGACCTCAAAAAGAACACGGGCAAGGAA----GAGCAC--AGAGCTCGT 18913 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATG 261946 |||||||| |||| | |||||| ||| ||||||||| Sbjct 18914 GATCTCTTCTACGCCTTGTGGATACCCGATCTGTTTATG 18952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175269308261348