Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq24486 120 3e-22 seq16702 93.3 4e-14 >seq24486 Length=213816 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||| || || || |||||| || |||||||| |||| | Sbjct 88371 CCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 88312 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| ||||| || || | ||| Sbjct 88311 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGA 88252 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||| | | | | | ||||| | |||||| Sbjct 88251 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACC 88192 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 |||| ||||| || || || ||||| |||||||| || || |||||| || Sbjct 88191 TCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCATTTTG 88141 >seq16702 Length=433992 Score = 93.3 bits (102), Expect = 4e-14 Identities = 178/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || || |||||||| || || | ||||||||| |||||||||| | || ||| | Sbjct 196526 GAGGGCAAAATGCATGGATTTCTGAGAATGTATTGGGCCAAGAAGATACTTGAATGGACA 196585 Query 44223 GAAGATGCGCAAACC--GCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGG 44280 ||| | | || | | ||| | | || ||| | ||||||||||| |||||| ||| Sbjct 196586 GAA-ACAC-CAGAGCAGGCGTTGGAGTATAGCATATTGCTGAACGACAAATACAGTCTGG 196643 Query 44281 ACGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGACA 44340 | || || || ||||| || || || || || |||||||| | | ||| |||| || | Sbjct 196644 ATGGCCGTGATCCCAATGGTTATGTGGGCTGCATGTGGTCTGTCGGGGGTATCCATGATA 196703 Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGCG 44400 || ||| |||| |||| | |||||| | ||||| |||||||| | || || Sbjct 196704 ACGCATGGAAGGAGCGTGCCATATTCGGCAAGATTCGCTATATGAACTATCAAGGATGTA 196763 Query 44401 TCAGAAAGTTTGATGTAAA 44419 |||| |||||||| || Sbjct 196764 AACGAAAATTTGATGTTAA 196782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450645097318320