Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq19105 170 2e-37 seq24188 159 3e-34 seq22097 111 1e-19 seq26160 109 4e-19 seq7852 109 4e-19 >seq19105 Length=237168 Score = 170 bits (188), Expect = 2e-37 Identities = 313/453 (69%), Gaps = 17/453 (4%) Strand=Plus/Minus Query 43835 CATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAAT 43894 ||||| ||||| || ||||| || |||||||| || || || || || |||||| Sbjct 37361 CATTTCATATCGCATGTGTTGGCCTTCTTTGCTGCTTCTGATGGAATTGTTAACGAAAAT 37302 Query 43895 TTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTT 43954 |||| || ||| |||||||| || | | || ||||| || |||||||| || Sbjct 37301 CTGGTCGAACGTTTTAGCCAAGAAGTGCAGGTGACCGAGGCACGTTGCTTTTATGGCTTC 37242 Query 43955 CAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 || |||||||| || ||| | ||||| |||||||||||| | || || || || || ||| Sbjct 37241 CAGATTGCCATGGAGAATGTGCATTCCGAAATGTACAGTGTGCTCATTGACACCTATATC 37182 Query 44015 AAAGATGGGCA----CGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGAT 44070 | ||| || |||| | ||| | || ||||| || ||||| | || || | Sbjct 37181 AGGGATCCTCATCAGCGAG-ACTATC---TCTTCAATGCCATTGAAACGATGCCGGCTGT 37126 Query 44071 TAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTC---TTTTGGAGA 44127 ||| | || ||||||||||| ||| ||||| ||| || | | | ||||| || Sbjct 37125 TAAGCGGAAGGCAGACTGGGCTCTTTCTTGGATCTCTTCGAAGGCTGCCAACTTTGGTGA 37066 Query 44128 ACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA---GGATCGTTTGCGGC 44184 ||| || | || ||||| | ||| |||||||| ||| |||| ||| | ||||| | Sbjct 37065 ACGTATTATTGCTTTTGCTGCTGTTGAAGGCATCTTC--TTCAGTGGGAGC-TTTGCATC 37009 Query 44185 CATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAAT 44244 ||| || ||| | ||||| || || | |||||||| | || || || || || || || Sbjct 37008 CATCTTCTGGCTGAAGAAGCGTGGACTTATGCCTGGACTTACATTCTCCAACGAATTGAT 36949 Query 44245 AAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 ||| |||||||| | ||||| || ||||| Sbjct 36948 CTCTCGCGATGAAGGTCTGCATTGTGACTTTGC 36916 >seq24188 Length=1289977 Score = 159 bits (176), Expect = 3e-34 Identities = 382/569 (67%), Gaps = 24/569 (4%) Strand=Plus/Plus Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 || ||||| ||||| || || || || |||| ||| ||||||||||| | ||| ||| Sbjct 949992 GGGGATCTGGGTCCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCCGAGTATCGCACC 950051 Query 40926 ATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATT 40985 | ||| || | | |||| || ||||| | ||| || || ||||||||| Sbjct 950052 TGCGATGATGACTACAGCGGACAAGGCATCGATCAGCTGCAGCAAGTGATTGATACGATT 950111 Query 40986 AAATCCGATCCC---GATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042 | | ||||| ||| || ||||| || ||| |||||||| || ||| || Sbjct 950112 CGAAACAATCCCTCGGAT---CGTCGTATCATTATGTCGGCGTGGAATCCCTTGGATATA 950168 Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTT-GCAAT----- 41096 | |||||| |||| ||||| || | || ||||| || || | ||||| Sbjct 950169 CCCAAAATGGCACTGCCTCCTTGCCACTGCTTGGTGCAGTTCTATGTGTCGCAATCTCGA 950228 Query 41097 GGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTT 41156 || ||||| || ||||| |||| || || | ||||||||||| ||||| || ||| Sbjct 950229 GGAGAACTCTCCTGTCATCTGTACCAGCGAAGTGCAGACATGGGACTCGGGGTTCCTTTT 950288 Query 41157 AACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCT 41216 ||||| || |||||| |||||||| || |||||||| || || ||| || || ||| Sbjct 950289 AACATCGCCTCTTATGCGCTGCTCACCTACATGATTGCCCATGTGACCGGATTGAAGCCT 950348 Query 41217 GGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTT- 41275 ||||| ||||| ||||| | |||||| ||| | || ||||||| | || || || Sbjct 950349 GGTGACTTTGTCCACACCATGGGAGATTCTCATGTGTATCTTAATCATGTGGAACCATTG 950408 Query 41276 -AACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTG 41334 ||||| ||||| | || | ||| | ||||||| | ||| ||||| || || | Sbjct 950409 CAACAG--CAACTAAAGCGGCAGCCTCGTTCATTTCCTAAGCTTAACATTAAGCG-GCAG 950465 Query 41335 TTGA-AAACATTGATGATTTTTGCATCGATGATTTTG---TCGTTTGCGATTACAATCCG 41390 | | ||| ||||| || ||| | || ||||||| ||||| | |||||||| Sbjct 950466 GTCACAAATATTGAAGACTTTCGTTATGAAGATTTTGAAATCGTT---GGATACAATCCT 950522 Query 41391 TACCCTAAAATCCACATGGACATGTCTGT 41419 | || || || ||||| ||| |||| Sbjct 950523 CATGAAAAGATTCAAATGGAGATGGCTGT 950551 >seq22097 Length=48055 Score = 111 bits (122), Expect = 1e-19 Identities = 340/521 (65%), Gaps = 16/521 (3%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || || || |||||||| | || | | |||||||| ||| |||| || | ||| Sbjct 40427 CCGAAGATCGTGAATGGTCCGCAGATTCTCGACAAATATGTGGGTGAATCCGAGGCGAAT 40486 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || |||||| |||| || || || ||||| ||| | || ||| | || | || ||| Sbjct 40487 GTGCGACGTCTGTTCGCCGAGGCCGAAGAGGAAGAGAAGCGTCTGGGACCGAATAGTGGA 40546 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTG----G 19604 ||||| || || || | ||||| | || || || || ||||| | || |||| | Sbjct 40547 TTGCATATCATCATCTTTGATGAGATCGATGCCATTTGCAAGCAGCGTGGCTCTGTGGCG 40606 Query 19605 TGTAAATG--GAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || | | || || || || || || ||||| | || | ||| | || || || Sbjct 40607 GGCAACAGCGGTGTCCACGATACCGTGGTGAATCAGTTGCTAACCAAAATCGATGGCGTG 40666 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||| || ||| | || ||||||||||| ||| ||| || | ||||| Sbjct 40667 GATCAGTTGAACAACATTCTGGTGATTGGCATGACCAATCGACGCGATATGATAGATGAG 40726 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | || || ||||| || | || | | || ||||| | || ||| |||| Sbjct 40727 GCGCTGTTGCGTCCCGGACGTCTTGAGGTCCAAATGGAAATCAGTTTGCCCAATGAGGCG 40786 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAA---AATAACCTTT 19837 || || || | || | || ||||| || ||| | ||||| | ||||| | Sbjct 40787 GGTCGCGTTCAGATCCTGAATATACACAC--CAAACGTATGCGGGATTTCAATAAGATC- 40843 Query 19838 TAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAG 19897 || |||||||| || |||| |||||| || ||||| || | ||||| || | Sbjct 40844 --AACGACGATGTGGACAACAAAGAGATTGCATCGCTCACCAAGAATTTCAGCGGTGCTG 40901 Query 19898 AACTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 | || ||||| || || | ||||||||||| | ||| ||| Sbjct 40902 AGCTCGAGGGTTTGGTCCGTGCCGCCCAATCGAGTGCCATG 40942 >seq26160 Length=43937 Score = 109 bits (120), Expect = 4e-19 Identities = 426/666 (64%), Gaps = 14/666 (2%) Strand=Plus/Minus Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGA 19332 |||||||| | || |||| || ||||| ||| || | || || | | |||||||| Sbjct 2549 ATCTTTCGACGTGCCTTTGCCTCACGTGTCTTTCCTCCTGAGCTCGTCGAGCAATTGGGC 2490 Query 19333 TGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATT 19392 ||| || || || | |||| ||||| || || || || ||||| || || Sbjct 2489 ATTAAGCACGTGAAAGGTATACTGCTCTATGGACCTCCAGGAACGGGTAAAACTTTGATG 2430 Query 19393 GCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 ||| || | || | | | || | || | ||||| ||||| || ||||| | Sbjct 2429 GCGCGACAGATTGGCACGATGCTCAATGCACGAGAACCCAAGATTGTGAACGGTCCGCAG 2370 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || | | ||||| || || ||||||| | ||| | |||||| | || || || || Sbjct 2369 ATTCTTGACAAATACGTTGGCGAATCGGAGGCCAATATCCGACGTCTATTCGCCGATGCG 2310 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAA 19572 || || || |||| || | || | || ||| ||||||| || || | ||||| Sbjct 2309 GAGGAGGAGGAAAAGCGACTGGGACCTAATAGTGGACTGCACATCATTATCTTCGATGAG 2250 Query 19573 TTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA------AATGGAGTACATGACACT 19626 | || || || || ||| | | || || | || | | ||| || || || || Sbjct 2249 ATCGATGCCATTTGCAAGGCACGTGGCTCAGTTGCAGGAAATAGTGGTGTTCACGATACG 2190 Query 19627 GTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTT 19686 || || |||||||| || | || | || || || | || ||||| ||||||||||| Sbjct 2189 GTCGTGAATCAACTGCTTGCCAAGATCGATGGCGTGGAGCAGCTGAACAATATTTTAGTG 2130 Query 19687 ATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTG 19746 ||||| ||||| ||| | | || | || || || | | || ||||| || | Sbjct 2129 ATTGGTATGACAAATCGTCGCGATATGATTGATGAGGCACTGCTGCGTCCCGGACGTCTT 2070 Query 19747 GAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATA 19806 || | | || ||||| | | ||| |||| ||||||||| | || | |||||| Sbjct 2069 GAGGTGCAAATGGAAATCAGTCTGCCCAATGAGCAGGGACGTGTGCAGATCCTCAACATA 2010 Query 19807 CATACATCAACCATGCGACA---AAATAACCTTTTAAATGACGATGTAGATCTAGA-AGA 19862 || || | |||||| | || || || | | |||||| || | | | ||| Sbjct 2009 CACACGAAACGCATGCGCGAGTTCAACAAGATTGCA---GGCGATGTTGA-CAACACAGA 1954 Query 19863 AATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGC 19922 ||||| ||| || || || | |||||||| || |||||||| || ||| | ||||| Sbjct 1953 GATTGCGGCGCGCACGAAGAATTTCAGCGGCGCTGAGCTTGAGGGTTTGGTGCGCGCCGC 1894 Query 19923 CCAATC 19928 ||||| Sbjct 1893 TCAATC 1888 >seq7852 Length=3634 Score = 109 bits (120), Expect = 4e-19 Identities = 426/666 (64%), Gaps = 14/666 (2%) Strand=Plus/Plus Query 19273 ATCTTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGA 19332 |||||||| | || |||| || ||||| ||| || | || || | | |||||||| Sbjct 2759 ATCTTTCGACGTGCCTTTGCCTCACGTGTCTTTCCTCCTGAGCTCGTCGAGCAATTGGGC 2818 Query 19333 TGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATT 19392 ||| || || || | |||| ||||| || || || || ||||| || || Sbjct 2819 ATTAAGCACGTGAAAGGTATACTGCTCTATGGACCTCCAGGAACGGGTAAAACTTTGATG 2878 Query 19393 GCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 ||| || | || | | | || | || | ||||| ||||| || ||||| | Sbjct 2879 GCGCGACAGATTGGCACGATGCTCAATGCACGAGAACCCAAGATTGTGAACGGTCCGCAG 2938 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || | | ||||| || || ||||||| | ||| | |||||| | || || || || Sbjct 2939 ATTCTTGACAAATACGTTGGCGAATCGGAGGCCAATATCCGACGTCTATTCGCCGATGCG 2998 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAA 19572 || || || |||| || | || | || ||| ||||||| || || | ||||| Sbjct 2999 GAGGAGGAGGAAAAGCGACTGGGACCTAATAGTGGACTGCACATCATTATCTTCGATGAG 3058 Query 19573 TTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA------AATGGAGTACATGACACT 19626 | || || || || ||| | | || || | || | | ||| || || || || Sbjct 3059 ATCGATGCCATTTGCAAGGCACGTGGCTCAGTTGCAGGAAATAGTGGTGTTCACGATACG 3118 Query 19627 GTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTT 19686 || || |||||||| || | || | || || || | || ||||| ||||||||||| Sbjct 3119 GTCGTGAATCAACTGCTTGCCAAGATCGATGGCGTGGAGCAGCTGAACAATATTTTAGTG 3178 Query 19687 ATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTG 19746 ||||| ||||| ||| | | || | || || || | | || ||||| || | Sbjct 3179 ATTGGTATGACAAATCGTCGCGATATGATTGATGAGGCACTGCTGCGTCCCGGACGTCTT 3238 Query 19747 GAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATA 19806 || | | || ||||| | | ||| |||| ||||||||| | || | |||||| Sbjct 3239 GAGGTGCAAATGGAAATCAGTCTGCCCAATGAGCAGGGACGTGTGCAGATCCTCAACATA 3298 Query 19807 CATACATCAACCATGCGACA---AAATAACCTTTTAAATGACGATGTAGATCTAGA-AGA 19862 || || | |||||| | || || || | | |||||| || | | | ||| Sbjct 3299 CACACGAAACGCATGCGCGAGTTCAACAAGATTGCA---GGCGATGTTGA-CAACACAGA 3354 Query 19863 AATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGATTAGTGAGGGCCGC 19922 ||||| ||| || || || | |||||||| || |||||||| || ||| | ||||| Sbjct 3355 GATTGCGGCGCGCACGAAGAATTTCAGCGGCGCTGAGCTTGAGGGTTTGGTGCGCGCCGC 3414 Query 19923 CCAATC 19928 ||||| Sbjct 3415 TCAATC 3420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397328341355770