Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq25128 223 3e-53 seq20348 104 2e-17 seq24486 95.1 1e-14 >seq25128 Length=30855 Score = 223 bits (246), Expect = 3e-53 Identities = 1005/1570 (64%), Gaps = 47/1570 (3%) Strand=Plus/Minus Query 130411 GACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTTTT 130470 ||| ||||||||||| ||||||| || ||||| ||||||| ||||||||| ||||| || Sbjct 20191 GACTGTGAATTGAATAGCATTGGCAGCTGGCTTTGTGCGCAGATAATACATTCCTGTCTT 20132 Query 130471 GAGTCCAATTTTGT--GTCCATAATTG--TGGATGCTGCACATTGTTTGGTAATTGGGTT 130526 ||| || || | | || || |||||| | || ||| ||| ||||||| Sbjct 20131 GAGGCCTGCCTTCCACGAGAAGAAATGAATGGATGTTA-AC-TTGCC--GTAGTTGGGTT 20076 Query 130527 GCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCA 130586 || ||| ||||||| ||||| || ||||||||||| || | || || |||| Sbjct 20075 CGGCAACGTGAATGTTGAATGATTGACTCTGGTCAATAAAAGCACCGCGATCAGCTGCCA 20016 Query 130587 TGTCGAGCATGGTTTTATTTTTC---ATCTCCCAAGCGGTCTTGTATAGATCCCTAATGT 130643 | | || ||||| || | || ||||| |||| ||||| ||||||| | | Sbjct 20015 TCTTGA---TGGTTGACTTCACCGAGATTTCCCAGACGGTTTTGTAAAGATCCCGTACTT 19959 Query 130644 GTTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCA 130703 | || ||| | || ||| | | || |||| || |||| || || Sbjct 19958 CCTGAGGAATGGATTCGATGTTTTGTATGGAGCCACGACTGGCAATGATTTGATTCTTCA 19899 Query 130704 TACTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTT 130763 | | ||| | || | || | | ||| | |||||||| ||| | | | Sbjct 19898 TGTCATCATCCCATAAATCCAGTTCGGTTAAATCCCGCAACAAATGATGATTTACCACAT 19839 Query 130764 GAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATT 130823 || || || | || ||||| || ||||||||| || |||| |||||||| | Sbjct 19838 TGAACTCTCCGGACAAAACGCGCCTGGTGTAAATGTTTGAAGTATACGGCTCAAAGGACT 19779 Query 130824 CGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAAT 130883 | || || || | || || || |||| ||| |||||||| ||||| | || || | Sbjct 19778 CATTATTACCCATGATCTGGGCAGTAGATGCCGTGGGCATTGGAGCCACAAGCAGCGAGT 19719 Query 130884 TACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAG 130943 | | || || ||| ||||||| || | || ||||||||| || || | Sbjct 19718 TTCTAACGCCATGCTCTTTGATTTTCAATTTTAGAGCAGTCCAATCCCAAAGGTTTGTGG 19659 Query 130944 GTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGA 131003 || | |||| ||||||||| | || || || || || || | |||| || Sbjct 19658 GTGTC---TTGTCCCACATATCGTACTGCAGAATTCCCTTGCTCACCGGACAACCAGCGT 19602 Query 131004 ACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAAT 131063 | | ||| ||| || || ||||||| || || || || | || || || | Sbjct 19601 AGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTCACAACTGGCCTCAAGGGCACCATAGT 19542 Query 131064 AAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATT 131123 | ||||||||| || || | ||| | | |||| || ||||| || ||||| Sbjct 19541 AGATGGTTTCGAAGATCTGCTGATTGAGCAATACGGCTTTGTCACTCTCATAGGGAAAGC 19482 Query 131124 TCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTA 131183 ||| | ||| || ||||| || | ||||| | |||| ||| | || | |||| ||| Sbjct 19481 GCATCAGAATTAAGGCGTCGGCAAAGCCCTGAACGCCAATGCCAATGGGACGATGTCTTA 19422 Query 131184 AATTACATTTACGCGAACATTCGGTGG--GATAAAGGTTAATGTCAATTATTTTGTTTAA 131241 |||| |||| | | | || | |||| || || ||||| |||||||| || Sbjct 19421 AATTGGATTTCTTTG--CCTCGGGCAGCGGATAGTAATTGATATCAATGATTTTGTTCAA 19364 Query 131242 ATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTC 131301 ||| | ||| ||| || || || | ||| | |||||| || || |||| Sbjct 19363 ATTTCTGGTGACAGTTTTAGTAACTTCCTTTAGTTTCTTGAAATCGAATGT-----TTTC 19309 Query 131302 ---GAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTC 131358 || || ||||| ||| | ||| || |||| ||| || || || | || || Sbjct 19308 TCTGAAGTC-ACAAACATATTCAAGGCTATCGATGCCAAATTGCAGACGGCAATCTCATC 19250 Query 131359 ATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATT 131418 | |||| | ||||||||||| ||| | || |||| || |||||||| | ||| Sbjct 19249 GGGTGCCGAATATTCAACAATTTCGGTGCAGAGGTTGCTGCATTTGATGGTGCCAACATT 19190 Query 131419 TTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGTTTC 131478 || |||||||| || || | ||| ||| | | |||||| || ||||| || || Sbjct 19189 CTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCATGTACGGAGTGCCAGTCTC 19130 Query 131479 GACTTGAGTTTCAATAATGT-AT-CGAAAGAGTTTTCGAGC---AGACAATTGATATTTG 131533 ||||||| ||||| |||| || | ||||||||| | || | || ||| ||| Sbjct 19129 AACTTGAGATTCAACAATGGCATACCAAAGAGTTT--GTGCTTTAATCACACGAT--TTG 19074 Query 131534 TATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCC--AAACGAAC 131591 || || | | | || ||| |||| | | ||||||| | || ||||| | Sbjct 19073 CGCGACCCTCGCTCT-CATACTTTGTATACAGCTTCTCAAAGTCATCCCCCCAAACGT-C 19016 Query 131592 TGTCCAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTC 131651 | ||||| |||||| | | ||||||| |||||||| | | || ||| || | Sbjct 19015 T-TCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCATTGGCTTCCACAC 18957 Query 131652 GCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTT 131711 |||||||||||| ||| || | ||| || ||||| || ||||| | |||| | | ||||| Sbjct 18956 GCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCACGAGCTCTGTGCTCTT 18897 Query 131712 CTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCA 131771 | | ||| | | ||||| | | || || || || || || | |||||| ||||||| Sbjct 18896 CCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCGGAATGCCAAGGTTCCA 18837 Query 131772 AATACACTGCCATTGCGCCTTTGCGCTTACCG---CCTTGATTAACATGACGAACCATGT 131828 || | || | |||||| ||||| ||| ||||||| |||| |||| ||| | Sbjct 18836 GGTAAATGGCAAAAGCGCCTGGCCGCTTGCCGCCACCTTGATCGACATAACGAGCCACAT 18777 Query 131829 TGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGT 131888 | || | || | | ||||||| ||||||| || | | ||||| |||| || Sbjct 18776 TATTAAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCATTAGTGCCACAGATCG 18717 Query 131889 AGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGA 131948 || |||| ||||| | || || || ||||||||||| || || || |||| |||| Sbjct 18716 AGGTGCCCTTGGCACGAATACAATGCACATTGAGTCCAATGCCACCAGCGGATTTGGAGA 18657 Query 131949 TTAGTGCGCA 131958 | | ||| || Sbjct 18656 TCATTGCACA 18647 >seq20348 Length=30608 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||||| || || ||||| |||||||| |||||||| ||| Sbjct 12919 CCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAA 12860 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| | ||||| | || || ||||| | || | |||||||||||| || || Sbjct 12859 AGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGA 12800 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || |||||| ||| | |||| | || || | | ||| || Sbjct 12799 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACC 12740 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || ||||| || ||||| || ||||||||||| Sbjct 12739 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq24486 Length=213816 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| |||| ||||| || || || || || || || || ||||||||| | Sbjct 88371 CCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 88312 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || || ||||| || || ||| | || |||||||||||||| || || Sbjct 88311 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGA 88252 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| || | | || | ||||| | || || || Sbjct 88251 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACC 88192 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||||| |||| |||||||| ||||||||||| Sbjct 88191 TCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCAT 88145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424797915585648