Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq25128 150 2e-31 seq18322 105 8e-18 >seq25128 Length=30855 Score = 150 bits (166), Expect = 2e-31 Identities = 587/912 (64%), Gaps = 27/912 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||||| || || || |||||| | ||||||||||||| ||| || || || || Sbjct 19810 GTAAATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGA 19751 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || || |||||||| |||| | || ||| | || || | ||| ||||| ||| Sbjct 19750 TGCCGTGGGCATTGGAGCCACAAGCAGCGAGTTTCTAACGCCATGCTCTTTGATT--TTC 19693 Query 110827 C--TTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 || ||| || ||| || | | | | | ||| || | ||||||| || ||| Sbjct 19692 AATTTTAGAGCAGTCCAATCCCAAAGGTTTG-TGGGTGTCTTGT-CCCACATATCGTACT 19635 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | || | || | | | | ||| |||| | |||||||||||| ||| | || || Sbjct 19634 GCAGAATTCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAG 19575 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 ||| ||||| || ||||| |||| | | || |||||||| ||||| | ||| | Sbjct 19574 CCAGCTCACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGA 19515 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 | ||||| || ||| | | |||| || ||| || | || || | | Sbjct 19514 GCAATACGGCTTTGTCACTCTCATAGGGAAAGCGCATCAGAATTAAGGCGTCGGCAAAGC 19455 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA---CTTTCGCGCAGTCTCAA 111119 | ||||| || | ||||| || | |||| | ||| || |||| | | | | | Sbjct 19454 CCTGAACGCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGC---A 19398 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 ||||| |||| | ||||||| | ||| | |||| |||| ||| | || || | || Sbjct 19397 GCGGATAGTAATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTT 19338 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 | | ||||| | |||| || || ||||| | | ||| || | | ||| | Sbjct 19337 CCTTTAGTTTCTTGAAATCGAATGTTT---TCTCTGAAGTCACAAACATATTCAAGGCTA 19281 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | |||||||||||||| || || ||||||| | | || || | |||||| || | Sbjct 19280 TCGATGCCAAATTGCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCGGTGC 19221 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | |||| | || || || || | ||||| || || |||||| ||||||| | | Sbjct 19220 AGAGGTTGCTGCATTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGT 19161 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 | ||| |||||||||| || || || ||||| || |||| | ||| || | ||||| Sbjct 19160 CTTTGAAGAGCATGTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCAAA 19101 Query 111420 CATCGGCGGCTGGTACAATGGC---GTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGA 111476 | | || | ||| | || || || ||||| ||| |||||||| || | Sbjct 19100 GA---GTTTGTGCTTTAATCACACGATTTGCGCGACCCTCGCTCTCATACTTTGTATACA 19044 Query 111477 GGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAA 111536 | ||||| || || ||| |||| | || || ||||| ||||| || | Sbjct 19043 GCTTCTCAAAGTCATCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACA 18984 Query 111537 GAGACCATTGACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGA 111594 | ||||| | || | || | || || |||||||| || || || || ||||||| || Sbjct 18983 GCGACCAAT--CCTCATTGGCTTCCACACGCTTCATAAACAGATCGGGTATCCACAAGGC 18926 Query 111595 TGAAAAGAGATC 111606 | |||||||| Sbjct 18925 GTAGAAGAGATC 18914 >seq18322 Length=84725 Score = 105 bits (116), Expect = 8e-18 Identities = 173/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 ||||| ||||| ||||||| ||||| |||||||| | |||||| | | ||||||||| Sbjct 71532 TCTTTTCCACCGGTGAGACGAGTACCGAATTGACCGCGTGGCTCTAACAAATTAATGTTG 71591 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 || || || ||||| | ||||| || || ||||| || || || || |||||||| Sbjct 71592 TTCGATCCCACATAGTTCTGCGCCAAATTCACAATGGTCATTTGC-AGCGAGACTTCACC 71650 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 || || || | |||| | || ||||| | ||| || ||| || ||||| | |||| Sbjct 71651 ATGATGATACGATGACATTTCGGCAACGGAACCCGACAGCTGGGCAACCTTAACTTCACG 71710 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| ||| | || || | | |||| || |||| ||| |||||| | ||||| Sbjct 71711 CTTGTCGTTACGCTTAAAACACGTAAACATAACCTTCCGCTGACCAGGCTTTAAGCCATC 71770 Query 182045 CGCCATA 182051 ||||| Sbjct 71771 TACCATA 71777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627825110558400