Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6463 125 8e-24 seq19105 104 3e-17 >seq6463 Length=6456 Score = 125 bits (138), Expect = 8e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 53821 CGCCTCGTCGACTCGATGGGGAACGATGCGGCGATCGTCCAGGCCGCCCGCGTTTCTTAC 53880 ||| | ||||| | ||||| |||||| ||| |||| ||||| || ||||| || || Sbjct 4549 CGCGTGGTCGATTATATGGGCGACGATGGCGCGGTCGTGCAGGCTGCGCGCGTGTCCTAT 4490 Query 53881 GGGGCCGGAACCAAGTCGGTCAGCGACGATCGGGCTCTGATCCGCTATCTCATGCGCCAC 53940 || || || ||| |||| ||| ||| || ||||||||||||||| ||||| ||| Sbjct 4489 GGCCGGGGGACGAAGAAGGTCTCCGAAGATGCGGGTCTGATCCGCTATCTGATGCGTCAC 4430 Query 53941 AAGCACACGACGCCGTTTGAGATGGTCGAATTCAAGTTTCACGTGCGCGCGCCCATCTAC 54000 || |||||||||| |||||| ||| ||||||||||||| |||| | | | Sbjct 4429 CGTCATTCGACGCCGTTCGAGATGTGCGAGATCAAGTTTCACGTAAAGCTGCCCGTGTTC 4370 Query 54001 GTGGCGCGTCAGTGGCTCCGTCACCGGACTGCGTCCGTCAACGA 54044 || ||||| |||||| | |||||||| | ||| || ||||| Sbjct 4369 GTCGCGCGGCAGTGGATTCGTCACCGTATGGCGAGTGTGAACGA 4326 >seq19105 Length=237168 Score = 104 bits (114), Expect = 3e-17 Identities = 351/534 (66%), Gaps = 21/534 (4%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| ||||||| || | || || || ||| ||| ||||||| |||||| Sbjct 37436 TCGTTCTGGACCGTCGAAGAAGTGGATCTGTCCAAGGACATGACTGATTGGGCCAAGCTT 37377 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 | | | |||| |||||||| | || |||||||||| || || ||||||| Sbjct 37376 ACGGATAATGAGCGTCATTTCATATCGCATGTGTTGGCCTTCTTTGCTGCTTCTGATGGA 37317 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTT---CCAAGGATGTCCAGATTGCCGAGGCC 59789 ||||| | |||||| | | | |||| ||| ||||| | || ||| | ||||||| Sbjct 37316 ATTGTTAACGAAAATCTGGTC--GAACGTTTTAGCCAAGAA-GTGCAGGTGACCGAGGCA 37260 Query 59790 CGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTC 59849 || | || || | | ||| || ||| | | || ||||| | |||| | Sbjct 37259 CGTTGCTTTTATGGCTTCCAGATTGCCATGGAGAATGTGCATTCCGAAATGTACAGTGTG 37200 Query 59850 ATGATCGATAAGTTGGTCAAGGATCCGGAAGAGA-AGGCTGGTCTGTTCCGTGCCATAGA 59908 | || || | | ||| |||||| | || || || ||| ||| |||||| || Sbjct 37199 CTCATTGACACCTATATCAGGGATCCTCATCAGCGAGACTA-TCTCTTCAATGCCATTGA 37141 Query 59909 GACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAGC 59968 ||| || || ||||| | || ||||| ||||| | ||||| | | | || Sbjct 37140 AACGATGCCGGCTGTTAAGCGGAAGGCAGACTGGGCTCTTTCTTGGATCTCTTC-GAAGG 37082 Query 59969 AT--CA--TTTGCACAACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCT 60023 | || |||| ||||| | || |||||||| ||| || ||||| ||||||||| | Sbjct 37081 CTGCCAACTTTGGTGAACGTATTATTGCTTTTGC-TGCTGTTGAAGGCATCTTCTTCAGT 37023 Query 60024 GGCTCGTTCTGTGCT---ATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGT 60080 || | || ||| || |||||||| || |||||||| || ||||| || || | Sbjct 37022 GG---GAGCTTTGCATCCATCTTCTGGCTGAAGAAGCGTGGACTTATGCCTGGACTTACA 36966 Query 60081 TTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 ||||||||||| |||| || || || || || || ||| || ||||| ||| Sbjct 36965 TTCTCCAACGAATTGATCTCTCGCGATGAAGGTCTGCATTGTGACTTTGCGGTG 36912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548344102217760