Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq18322 123 3e-23 seq19105 116 4e-21 >seq18322 Length=84725 Score = 123 bits (136), Expect = 3e-23 Identities = 187/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||||||| ||| || ||||| | ||||| ||||||||||| Sbjct 71505 GTGAAAATGTAACGAGCGCTTGCACAATCTTTTCCACCGGTGAGACGAGTACCGAATTGA 71564 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||||| || | || | |||||| | |||||| |||| || ||||| || ||| Sbjct 71565 CCGCGTGGCTCTAACAAATTAATGTTGTTCGATCCCACATAGTTCTGCGCCAAATTCACA 71624 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || ||| || | |||||||| ||||||| | | || || ||| | ||| Sbjct 71625 ATGGTCATTTGCAGCGAGACTTCACCATGATGATACGATGACATTTCGGCAACGGAACCC 71684 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | |||||| || ||||| | || | | ||| ||| | || | | | || ||| Sbjct 71685 GACAGCTGGGCAACCTTAACTTCACGCTTGTCGTTACGCTTAAAACACGTAAACATAACC 71744 Query 117545 TTGCGCTGACTTGGCTTCAGACCATC 117570 || ||||||| ||||| | ||||| Sbjct 71745 TTCCGCTGACCAGGCTTTAAGCCATC 71770 >seq19105 Length=237168 Score = 116 bits (128), Expect = 4e-21 Identities = 175/247 (71%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 74747 CACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAG 74806 ||| ||||| || |||| |||||||| | |||||||| || || || | ||| Sbjct 36912 CACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATGTAAG 36971 Query 74807 GCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAA 74866 ||||||||||||||||||||||||| ||| ||||||| ||| ||||||||||| Sbjct 36972 TCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGCAAAGCTCCCACTGAAGAA 37031 Query 74867 GATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGT----GCATCGGAAG 74922 ||||||||| ||| ||||| || | || |||| | | || | | || | |||| Sbjct 37032 GATGCCTTCAACAGCAGCAAAAGCAATAATACGTT-CACCAAAGTTGGCAGCCTTCGAAG 37090 Query 74923 TCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT 74982 ||||||| ||||||| || || || || || || || || | || || || || | Sbjct 37091 AGATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAATGGCAT 37150 Query 74983 GGAAGAG 74989 |||||| Sbjct 37151 TGAAGAG 37157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547035733369200