Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24486 150 2e-31 seq20348 143 3e-29 seq25099 122 1e-22 seq14047 118 1e-21 seq18322 86.0 7e-12 >seq24486 Length=213816 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || | || |||||||| || || | ||||| ||| | Sbjct 88144 AATGCAAATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCTC 88203 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | |||||||| || |||||||||||||||||||| ||||| || Sbjct 88204 TGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCA 88263 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||||| || || ||||| ||||| || ||||||| || || || | ||||| || Sbjct 88264 ACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAA 88323 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || | || | || ||||||| || ||||| Sbjct 88324 CATCCAGAAGGAGTCGACCTTGCACTTGGTGCTGCGTCTGCGTGGTGG 88371 >seq20348 Length=30608 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || || || ||||| || ||||||||||| || | Sbjct 12693 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 12752 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | |||| | || || || ||||||||||| || |||||||||||||| || Sbjct 12753 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 12812 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || ||||| || |||||| | || |||| || || || | || || ||| Sbjct 12813 CAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAAT 12872 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || || | || | || | || ||||||||||| Sbjct 12873 ATCCAAAAAGAGTCTACATTGCACTTGGTGCTCCGCCTTCGCGGTGG 12919 >seq25099 Length=83779 Score = 122 bits (134), Expect = 1e-22 Identities = 100/122 (82%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 || || ||||| ||||||||||| || |||||||| |||||||| ||||||| |||||| Sbjct 21052 ATCCCCCCAGATCAGCAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGATGGTCGTACT 20993 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 | | ||||||||| |||| ||||| || |||||||| | ||||||||||| ||||| Sbjct 20992 TTGTCCGACTATAATATCCAGAAGGAGTCTACTCTTCACTTGGTCTTGCGTCTCCGCGGA 20933 Query 27631 GG 27632 || Sbjct 20932 GG 20931 Score = 116 bits (128), Expect = 4e-21 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||| ||||| || || || || || || | ||||| ||||| ||| ||||| Sbjct 21398 CTGACCGGAAAGACCATCACCCTGGAAGTAGAACCTTCTGATACCATTGAGAATGTGAAG 21339 Query 27487 --GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTG 27544 || || || || || ||||| ||||| |||||||| ||||||||||| || || || | Sbjct 21338 NGGCCAAGATCCAAGATAAGGAAGGAATCCCTCCAGATCAGCAGCGTCTCATCTTCGCCG 21279 Query 27545 GTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTC 27604 | ||||| || ||||||| ||| ||||| | || ||||| | || || || || || | Sbjct 21278 GCAAGCAGCTGGAGGATGGTCGCACCCTTTCTGATTATAACATTCAGAAAGAGTCGACCC 21219 Query 27605 TTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| | ||| | || || || || || Sbjct 21218 TTCACTTGGTCCTCCGACTCCGAGGCGG 21191 >seq14047 Length=15719 Score = 118 bits (130), Expect = 1e-21 Identities = 122/160 (76%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| ||| |||||||||| || || |||||||||||||| || ||||| |||||||| Sbjct 14492 CATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCAGCAGCG 14551 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 | || ||||| ||||| || ||||||| |||||| | ||||||||||| |||| Sbjct 14552 T----NCTTCGCTGGCAAGCAGCTGGAGGATGGTCGTACTTTGTCAGACTATAATATCCA 14607 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 ||||| || || || || | ||| | || || || ||| Sbjct 14608 GAAGGAGTCAACCCTCCACTTGGTCCTCCGACTCCGTGGT 14647 Score = 118 bits (130), Expect = 1e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| ||||||| || || || ||||| || ||||| || ||||| ||||||||||| || Sbjct 15543 AATGTGAAGGCCAAGATCCAAGACAAAGAAGGAATCCCCCCAGATCAGCAGCGTCTGATC 15602 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| || ||||||| ||| || || |||| || ||| | ||||||||| Sbjct 15603 TTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTTTCAGATTACAATATTCAAAAGGAA 15662 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||||| | ||| | || || || ||||| Sbjct 15663 TCGACACTTCACTTGGTCCTCCGACTACGTGGTGG 15697 >seq18322 Length=84725 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 32045 GTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACG 32104 |||| | ||||| || ||||||||||| | ||| || || | | ||||| || | Sbjct 71709 GTGAAGTTAAGGTTGCCCAGCTGTCGGGTTCCGTTGCCGAAATGTCATCGTATCATCATG 71650 Query 32105 GCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATA 32164 | || | ||||| || |||||||| || | || ||||||| ||| || | || | Sbjct 71649 GTGAAGTCTCGCTGCAAATGACCATTGTGAATTTGGCGCAGAACTATGTGGGATCGAACA 71590 Query 32165 ACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATG 32224 || | || || | |||||| || || || || || || ||| ||||||| || ||| Sbjct 71589 ACATTAATTTGTTAGAGCCACGCGGTCAATTCGGTACTCGTCTCACCGGTGGAAAAGATT 71530 Query 32225 CTGCGAGCTCCCGTTACATCTTCAC 32249 ||| ||| | |||||||| ||||| Sbjct 71529 GTGCAAGCGCTCGTTACATTTTCAC 71505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570122525496480