Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq24486 95.1 8e-15 seq20348 84.2 1e-11 seq25099 82.4 5e-11 >seq24486 Length=213816 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| || | || |||||| || ||||| || || || || || || Sbjct 88362 AGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGG 88303 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | ||||||||| || || || | ||||||| Sbjct 88302 CCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATTCCCTCC 88243 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || ||||| | |||||| |||| ||| Sbjct 88242 TTGTCCTGGATC-TTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACCTCCAAGGT 88184 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || || || || || |||||||| || || ||||| |||| Sbjct 88183 GATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCATTTTGA 88140 >seq20348 Length=30608 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | |||||| || | || ||| ||||| || || ||||| ||| Sbjct 12919 CCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAA 12860 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || ||| | ||||| | ||| || |||||||| || ||||||||||| || || || Sbjct 12859 AGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGA 12800 Query 34600 ACTCCCTCCTTGTC 34613 | ||| || ||||| Sbjct 12799 ATTCCTTCTTTGTC 12786 >seq25099 Length=83779 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||||| || || | ||||| || || || ||| || |||||||||||||| ||| Sbjct 21191 CCGCCTCGGAGTCGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAGAA 21250 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || || || || || ||||| || || | |||||| || || || || Sbjct 21251 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGG 21310 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||| ||||| ||| |||||| Sbjct 21311 ATTCCTTCCTTATCTTGGATCTT 21333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314628512196482