Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq16702 176 4e-39 seq20348 152 4e-32 seq24486 131 1e-25 seq14047 96.9 3e-15 >seq16702 Length=433992 Score = 176 bits (194), Expect = 4e-39 Identities = 321/464 (69%), Gaps = 12/464 (3%) Strand=Plus/Plus Query 135306 TAGTGCGCCGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAG 135365 ||||||| ||||| |||||||| || ||||||||||| ||| || | || ||| || | | Sbjct 196326 TAGTGCGACGCGAGTTGGCGGATAACTTTTGTTATTACAACGAAAACTACGATAGCTT-G 196384 Query 135366 AAGGTGCTC-CGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGAT---CGCAGA 135421 |||| | | | |||||| | || | | | | || || | ||| ||||| Sbjct 196385 AAGGGATTGGCCGATTGGGCGTATCAGAGTCTCGAAGCCCATCGCAAGGATAAACGCAG- 196443 Query 135422 GACTTTTGTTACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAAC 135481 | ||| || || | || || ||| || ||| || ||||| | |||||| Sbjct 196444 --CCCTTGCTATACACTGGACGAACTGGAGCAGTCGTGCACCTATGACGACCTTTGGAAC 196501 Query 135482 GCGGCACAACGGCAGCT--TAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATT 135539 |||| ||| |||||| | | ||| ||||||||||| |||||| || | ||||||| Sbjct 196502 TCGGCGCAATTGCAGCTGGTCAATGAG--GGCAAAATGCATGGATTTCTGAGAATGTATT 196559 Query 135540 GGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATAT 135599 |||| || |||||| | |||||| | | | | || | ||||| | | | |||| Sbjct 196560 GGGCCAAGAAGATACTTGAATGGACAGAAACACCAGAGCAGGCGTTGGAGTATAGCATAT 196619 Query 135600 TTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGTTGTATGT 135659 | | || || | |||||| | ||||| || ||| | ||||| || || || || |||| Sbjct 196620 TGCTGAACGACAAATACAGTCTGGATGGCCGTGATCCCAATGGTTATGTGGGCTGCATGT 196679 Query 135660 GGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGTTTGGCAAGATTC 135719 ||||| | | ||| | || ||| | | |||||||||||| | || |||||||||| Sbjct 196680 GGTCTGTCGGGGGTATCCATGATAACGCATGGAAGGAGCGTGCCATATTCGGCAAGATTC 196739 Query 135720 GCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTAAAT 135763 |||||||||||||| | || |||| | |||||||| |||| ||| Sbjct 196740 GCTATATGAACTATCAAGGATGTAAACGAAAATTTGATGTTAAT 196783 >seq20348 Length=30608 Score = 152 bits (168), Expect = 4e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || ||| | || |||||||| || |||||||| Sbjct 12693 ATGCAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 12752 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||| ||||||||||| || || || |||||| Sbjct 12753 GATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAA 12812 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | |||||||| ||||||||||| | || ||||||||||||| Sbjct 12813 CAGCGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAAT 12872 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| ||||| || || || ||||| | || | || ||||| Sbjct 12873 ATCCAAAAAGAGTCTACATTGCACTTGGTGCTCCGCCTTCGCGGTGG 12919 >seq24486 Length=213816 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| |||||| | || || | || ||||| || || Sbjct 88145 ATGCAAATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCCTCT 88204 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || || ||||| || || || || || |||||| Sbjct 88205 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAA 88264 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || |||| || | || | ||||| |||||| Sbjct 88265 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 88324 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||||| || ||||| ||||| |||| ||||| || Sbjct 88325 ATCCAGAAGGAGTCGACCTTGCACTTGGTGCTGCGTCTGCGTGGTGGTAT 88374 >seq14047 Length=15719 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||||||||| || || || ||||| |||||| | || | ||||||||| Sbjct 15555 AAGATCCAAGACAAAGAAGGAATCCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 15614 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || |||| || || || |||| |||||||| ||||||||||| ||||| | || Sbjct 15615 CAGCTGGAGGATGGTCGCACTCTTTCAGATTACAATATTCAAAAGGAATCGACACTTCAC 15674 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | || | || ||||| || Sbjct 15675 TTGGTCCTCCGACTACGTGGTGGTAT 15700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434775127006080