Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq4621 100 9e-17 >seq4621 Length=3921 Score = 100 bits (110), Expect = 9e-17 Identities = 206/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 40091 CCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATG 40150 |||||||| |||||| || || | | ||||| | |||| || || ||||| Sbjct 450 CCGAAGGTAATGATCTGCGCCACACGGCTTCCGCCGTATTCCTCGCGCACATAACGGATC 509 Query 40151 ACCTCGCCGCGACG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCT 40208 ||||| ||||||| || | || ||| ||||| || | || ||||||||||| |||| Sbjct 510 ACCTCATCGCGACGATCCTGACA--GAAATCGATATCGAAATCCGGCATGGACACACGCT 567 Query 40209 CGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCC 40268 ||||||| || |||| ||||| | | || | | ||||| | || || ||| Sbjct 568 CGGGGTTTAGAAACCTTTCGAACAGCAATCCAAACGGAATGGGATCAATATCCGTAATCG 627 Query 40269 CGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACG 40327 || ||| ||||| || || || || || | || || || || || |||||| | | Sbjct 628 TCAGCGCA-TAGGCAACAAGTGACCCTGCGCCTGACCCACGTCCCGGGCCGACCGGAATG 686 Query 40328 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCC 40387 ||| | | || ||||| || |||||||| |||| |||||||||| || |||||| Sbjct 687 TCGTGCGCTTTCGCCCACTGAATAAAGTCGGCAACGATCAGGAAGTAGCCGGGAAAGCCC 746 Query 40388 AT 40389 || Sbjct 747 AT 748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160356200215596