Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq6607 311 4e-80 seq11958 212 3e-50 >seq6607 Length=38272 Score = 311 bits (344), Expect = 4e-80 Identities = 534/772 (69%), Gaps = 15/772 (2%) Strand=Plus/Plus Query 66460 GGACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCC 66519 |||||| |||||||||||||| | | ||||| ||| ||||| || || || || Sbjct 35445 GGACGTGGTTCCCACCGGCTCTCTGGGGCTGGATATCGCTCTGGGGATTGGCGGCCTGCC 35504 Query 66520 GAGGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCT 66579 | | ||||| ||| | ||||| |||||||| ||| || || || | || ||| || Sbjct 35505 GCGTGGCCGTGTGATTGAAATTTACGGCCCGGAAAGCTCCGGTAAAACCACGCTGGCGCT 35564 Query 66580 CCACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCA 66639 || || | || | || |||||| || |||| | ||||| || || || ||||| Sbjct 35565 GCATGCCATTGCAGAGGCCCAGAAGCGGGGCGGCACCTGCGCCTTTATTGATGCCGAGCA 35624 Query 66640 CTCCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGT 66699 | | |||||||| | ||||||||| |||||| ||||| | || || || || | Sbjct 35625 CGCGCTGGACCCCGGCTACGCCAAGAAGCTCGGCGTGGATATTGATAATCTGCTGATCAG 35684 Query 66700 TCAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 66759 |||||||| | || |||||||| ||||| || | ||| || || ||||||| Sbjct 35685 CCAGCCCGACGCGGGTGAGCAGGCGCTGGAAATTGCGGACACACTGGTGCGCTCTGGCGC 35744 Query 66760 GCTGTCCATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGG 66819 | | | | || || || ||||||||||| |||||||| |||||||| ||||| Sbjct 35745 GATTGATGTGCTGGTGGTGGATAGTGTGGCGGCCCTTGTGCCGCGTGCCGAGCTTGAAGG 35804 Query 66820 CGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAA 66879 || || || ||||| || ||||||||||| || || || ||| ||||| ||||||| Sbjct 35805 GGATATGGGTGACAGCCATGTCGGCCTGCATGCCCGTCTGATGAGTCAGGCGCTGCGCAA 35864 Query 66880 GCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGA 66939 ||| || ||| || | | || ||||||| ||| | ||| | |||||| | || Sbjct 35865 GCTGACAGGCTCCGTTGCGCGCTCCAACACCATGATGATCTTCCTGAACCAGATCCGTCT 35924 Query 66940 GAAGATCGGCAACGTG---GGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTT 66996 ||| || ||| || ||| || ||| || ||||| |||||||| || || | Sbjct 35925 GAAAATTGGCGTGATGTTTGGCAAC---CCG---GAAACCACGACGGGCGGGAACGCACT 35978 Query 66997 GAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGA 67056 || |||||||||||| || ||| ||||| | || ||||||| || ||||| || Sbjct 35979 GAAGTTCTACGCCTCCGTGCGTCTGGATATTCGCCGCATCGGGTCCATCAAGGACAAGGA 36038 Query 67057 TGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCA 67116 ||||| || ||||||| || ||||||||||| ||||| |||||| ||||||||||| Sbjct 36039 TGAGGTGGTGGGCAACCAGACGCGGGTGAAGGTGGTCAAAAACAAGATGGCCCCGCCGTT 36098 Query 67117 CCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTC---GAACT 67173 ||| | | ||||||| || |||| || || |||||| | ||||| || || Sbjct 36099 CCGTCAGGTCGAGTTCGATATCATGTATGGCGAAGGCATC---AGCAAGGTCGGGGAGCT 36155 Query 67174 CCTCGACCTGGCCGTGTCGCAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTC 67225 | || |||| |||| || ||||| ||||||| ||||| |||||| Sbjct 36156 GATTGATCTGGGCGTGAAAGCCGGTGTGGTGGAGAAGTCCGGCGCATGGTTC 36207 >seq11958 Length=2353 Score = 212 bits (234), Expect = 3e-50 Identities = 276/377 (73%), Gaps = 11/377 (3%) Strand=Plus/Minus Query 66816 AAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGC 66875 |||||||||| || ||||| || || || ||||| || ||||||||| ||||| ||| Sbjct 1157 AAGGCGACATGGGCGACAGCCATGTGGGTCTGCATGCCCGCCTCATGAGCCAGGCTCTGC 1098 Query 66876 GCAAGCTCACTGGCACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGC 66935 ||||||| || || || |||| || |||||||||| | ||| | |||||| | | Sbjct 1097 GCAAGCTGACGGGAACGGTCTCGCGCTCCAACACGCTCGTGATCTTCCTGAACCAGATCC 1038 Query 66936 GCGAGAAGATCGGCAACGTGGGCTACGGCCCGAAT---GAGACCACCACGGGCGGAAAGG 66992 | ||| |||||| ||| | |||| ||| ||||| ||||||||||| || | Sbjct 1037 GTATGAAAATCGGC---GTGATGTTCGGC---AATCCGGAGACGACCACGGGCGGCAACG 984 Query 66993 CTTTGAGGTTCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGAGAAGGAAG 67052 | ||| ||||||| |||| |||| | ||| |||| ||||||| | || ||||| Sbjct 983 CCCTGAAGTTCTACTCCTCCATCCGCCTCGATATCCGCCGCATCGGCTCCATCAAGGACA 924 Query 67053 GCGATGAGGCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGC 67112 || |||| ||||||||||| ||||| || |||||||||||||||||| ||||||| | Sbjct 923 AGGACGAGGTTGTCGGCAACCAGACCCGCGTCAAGGTCGTCAAGAACAAGATGGCCCCCC 864 Query 67113 CGCACCGCAATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGA-GGTCGAA 67171 || ||| | | ||||||| | || |||| || || |||||| || || || |||| Sbjct 863 CGTTCCGTCAGGTCGAGTTCGACATCATGTATGGCGAAGGCATC-AGCAAGATGGGCGAA 805 Query 67172 CTCCTCGACCTGGCCGT 67188 || ||||| |||| ||| Sbjct 804 CTGCTCGATCTGGGCGT 788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242782795691436