Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq24188 116 3e-21 >seq24188 Length=1289977 Score = 116 bits (128), Expect = 3e-21 Identities = 267/399 (67%), Gaps = 10/399 (3%) Strand=Plus/Plus Query 34401 TGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG 34460 |||| ||||||||||| ||||||||| | || ||||| || |||||||| |||| | Sbjct 949999 TGGGTCCGGTCTACGGCTTCCAGTGGCGTCATTTTGGAGCCGAGTATCGCACCTGCGATG 950058 Query 34461 CGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACAC--CTTGAAGCG 34518 ||||| ||||| || || ||||||||| | ||||| || || | ||| | Sbjct 950059 ATGACTACAGCGGACAAGGCATCGATCAGCTGCAGCAAGTGATTGATACGATTCGAAAC- 950117 Query 34519 GAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 || || || | | ||| | |||| |||||||| || |||| | || || Sbjct 950118 -AATCCCTCGGATCGTCGTATCATTATGTCGGCGTGGAATCCCTTGGATATACCCAAAAT 950176 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCG-AAT-----GGGGAGCT 34632 ||| || || || |||||| | | || ||||| || || ||| || || || Sbjct 950177 GGCACTGCCTCCTTGCCACTGCTTGGTGCAGTTCTATGTGTCGCAATCTCGAGGAGAACT 950236 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 ||||| || || || || ||| | ||||||||| | ||||| || || ||||| || Sbjct 950237 CTCCTGTCATCTGTACCAGCGAAGTGCAGACATGGGACTCGGGGTTCCTTTTAACATCGC 950296 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCT 34752 ||| || |||||||| |||||||| || ||||| || ||| ||||| || | Sbjct 950297 CTCTTATGCGCTGCTCACCTACATGATTGCCCATGTGACCGGATTGAAGCCTGGTGACTT 950356 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCA 34791 || || || |||| ||| | ||| | || || || || Sbjct 950357 TGTCCACACCATGGGAGATTCTCATGTGTATCTTAATCA 950395 Score = 116 bits (128), Expect = 3e-21 Identities = 267/399 (67%), Gaps = 10/399 (3%) Strand=Plus/Minus Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 || || || || | ||| | ||| |||| || || || | || ||||| ||| || Sbjct 950395 TGATTAAGATACACATGAGAATCTCCCATGGTGTGGACAAAGTCACCAGGCTTCAATCCG 950336 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||||| || |||||||| |||||||| || ||| || ||||| || || ||||| Sbjct 950335 GTCACATGGGCAATCATGTAGGTGAGCAGCGCATAAGAGGCGATGTTAAAAGGAACCCCG 950276 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCC-----ATT-CGCG 6727 | ||||||||| | ||| || || || || ||||| || || || ||| || Sbjct 950275 AGTCCCATGTCTGCACTTCGCTGGTACAGATGACAGGAGAGTTCTCCTCGAGATTGCGAC 950216 Query 6728 ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGG 6787 || ||||| || | | |||||| || || || ||||| || | |||| || Sbjct 950215 ACATAGAACTGCACCAAGCAGTGGCAAGGAGGCAGTGCCATTTTGGGTATATCCAAGGGA 950156 Query 6788 TTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAG--GTGTCGATCA 6845 |||||||| |||| | ||| | | || || || | ||| | || || |||| Sbjct 950155 TTCCACGCCGACATAATGATACGACGATCCGAGGGATT--GTTTCGAATCGTATCAATCA 950098 Query 6846 CGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCG 6905 | | ||||||||| || || ||||| ||||| | |||| |||||||| | Sbjct 950097 CTTGCTGCAGCTGATCGATGCCTTGTCCGCTGTAGTCATCATCGCAGGTGCGATACTCGG 950038 Query 6906 CCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCA 6944 | ||||| || | ||||||||| ||||||||||| |||| Sbjct 950037 CTCCAAAATGACGCCACTGGAAGCCGTAGACCGGACCCA 949999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448114731158880