Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq20348 165 2e-35 seq25099 156 1e-32 seq24486 145 2e-29 seq14047 109 1e-18 >seq20348 Length=30608 Score = 165 bits (182), Expect = 2e-35 Identities = 169/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | ||| | || |||||||||||||| || ||||| | ||| || Sbjct 12913 CGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTG 12854 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||| |||||||| || ||||| | || ||||| || ||||||| |||| Sbjct 12853 CGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCT 12794 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || |||||||| ||||| ||| || ||||||||||| || || ||| ||||| ||| Sbjct 12793 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGA 12734 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| |||||||| || || || || | ||||| Sbjct 12733 GTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq25099 Length=83779 Score = 156 bits (172), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| ||||| | |||||| || |||||||| || ||||||||||| | |||||| Sbjct 21197 CGGAGTCGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAGAAAGGGTG 21256 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| |||||||||||||| |||||||| || || || || || ||||| | |||| Sbjct 21257 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCCT 21316 Query 211014 TCCTTGTCCTGGATCTT--TTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 ||||| || |||||||| ||||| || || ||||| ||||| ||| || || | Sbjct 21317 TCCTTATCTTGGATCTTGGCCNCTTCACATTCTCAATGGTATCAGAAGGTTCTACTTCCA 21376 Query 211072 GAGTGATCGTCTTTCCCGTGAG 211093 | ||||| |||||||| || || Sbjct 21377 GGGTGATGGTCTTTCCGGTCAG 21398 >seq24486 Length=213816 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| || || | || || | ||||| |||||||||||||| Sbjct 88341 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 88282 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 |||||||| || || ||||| || || |||| ||| ||||||||||||||||| || Sbjct 88281 GCGAAGATCAGACGCTGTTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTG 88222 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || ||||||||||||||| || ||||| | ||||| ||||| || || | || Sbjct 88221 ACATTCTCGATGGTGTCAGAGGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTT 88162 Query 211098 TTTACAAACACCTGCATTTT 211117 || || || | |||||||| Sbjct 88161 TTCACGAAGATTTGCATTTT 88142 >seq14047 Length=15719 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| ||||| | |||||| || || || ||||| || || ||||| | ||| || Sbjct 15692 ACGTAGTCGGAGGACCAAGTGAAGTGTCGATTCCTTTTGAATATTGTAATCTGAAAGAGT 15633 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||||||||||||| |||||||| || || || || || || || | ||| Sbjct 15632 GCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCC 15573 Query 211013 TTCCTTGTCCTGGATCTT 211030 ||| ||||| |||||||| Sbjct 15572 TTCTTTGTCTTGGATCTT 15555 Score = 86.0 bits (94), Expect = 1e-11 Identities = 113/157 (72%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||| ||||| | ||| || || ||||| || ||||| ||||| || | | || Sbjct 14644 ACGGAGTCGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTATAGTCTGACAAAGT 14585 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| |||||||||||||| |||||| || || || || || || | ||| Sbjct 14584 ACGACCATCCTCCAGCTGCTTGCCAGCGAAG----NACGCTGCTGATCTGGGGGGATTCC 14529 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 |||||||| |||||||| ||||| || || ||| Sbjct 14528 CTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATG 14492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158760600011210