Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq24486 167 6e-36 seq20348 132 1e-25 seq14047 109 1e-18 seq25099 104 6e-17 seq19648 102 2e-16 seq958 102 2e-16 >seq24486 Length=213816 Score = 167 bits (184), Expect = 6e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| | || || || || |||| ||||| |||| || ||| Sbjct 88366 ACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGT 88307 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||||| || || ||||| || || ||||| || Sbjct 88306 GCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGGAATTCC 88247 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| |||| ||||| || || Sbjct 88246 CTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCACCTCCAA 88187 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||||||| ||||| ||||| | ||| | ||||||||| Sbjct 88186 GGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCATTTT 88142 >seq20348 Length=30608 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| | || || |||||||||| ||||||||||| | ||| Sbjct 12913 CGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTG 12854 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||||||| | ||||| || || ||||| | || ||||| || || ||||| ||| Sbjct 12853 CGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCT 12794 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 || ||||| || ||||| || ||| ||||||||| || || | ||| || || | Sbjct 12793 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGA 12734 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| ||||| | ||||| | ||| | |||||| Sbjct 12733 GTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq14047 Length=15719 Score = 109 bits (120), Expect = 1e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| ||||| | ||| || || ||||| ||||| | ||||||||| | | ||| Sbjct 15692 ACGTAGTCGGAGGACCAAGTGAAGTGTCGATTCCTTTTGAATATTGTAATCTGAAAGAGT 15633 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || || || || || || || || || Sbjct 15632 GCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCC 15573 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACA 225639 ||| |||||||||||||| ||||||| Sbjct 15572 TTCTTTGTCTTGGATCTTGGCCTTCACA 15545 Score = 96.9 bits (106), Expect = 8e-15 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| |||| ||||| | |||||| || || || || |||| ||| || || | |||||| Sbjct 14644 ACGGAGTCGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTATAGTCTGACAAAGT 14585 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| ||||||||| || || || || || || || || Sbjct 14584 ACGACCATCCTCCAGCTGCTTGCCAGCGAAGNA----CGCTGCTGATCTGGGGGGATTCC 14529 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACA 225639 ||||||||||||||||| ||||||| Sbjct 14528 CTCCTTGTCTTGGATCTTAGCCTTCACA 14501 >seq25099 Length=83779 Score = 104 bits (114), Expect = 6e-17 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||| ||||| | ||| || || || ||||| || | || ||||| | | || Sbjct 21197 CGGAGTCGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAGAAAGGGTG 21256 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| || |||||||| || || || || || || || || ||| Sbjct 21257 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCCT 21316 Query 225613 TCCTTGTCTTGGATCTT--TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||| ||||||||||| ||||||| || ||||| || || | ||| || || | Sbjct 21317 TCCTTATCTTGGATCTTGGCCNCTTCACATTCTCAATGGTATCAGAAGGTTCTACTTCCA 21376 Query 225671 ACGTGATCGTCTTGCCCGTCA 225691 ||||| ||||| || |||| Sbjct 21377 GGGTGATGGTCTTTCCGGTCA 21397 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||||| || || | ||| || || || || || |||| ||| || |||| |||||| Sbjct 22494 ACGGAGTCTGAGAACCAAGTGCAGTGTTGACTCCTTCTGGATATTATAGTCGGACAAAGT 22553 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGG 225602 | ||||| || |||||||| |||||||||||||| || || || || || Sbjct 22554 GCGACCATCCTCCAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGATCTGG 22604 >seq19648 Length=48000 Score = 102 bits (112), Expect = 2e-16 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||||||||||||||||||||| || || || || || |||| Sbjct 2022 TTCAGGGTGTCCAAAAAATCAGAATAAATGTTGATAAAGAATTGGGTCTCCCCCTCCTGC 2081 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| ||||| || ||||| ||||||| ||||||||| Sbjct 2082 TGGGTCAAAGAATGAGGTATTTAAATTTCGATCAGTTAA 2120 >seq958 Length=7802 Score = 102 bits (112), Expect = 2e-16 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || ||||||||||||||||||||||||||||| || || || || || |||| Sbjct 730 TTCAGGGTGTCCAAAAAATCAGAATAAATGTTGATAAAGAATTGGGTCTCCCCCTCCTGC 789 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| ||||| || ||||| ||||||| ||||||||| Sbjct 790 TGGGTCAAAGAATGAGGTATTTAAATTTCGATCAGTTAA 828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192128529169676