Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq25128 495 5e-135 seq19105 273 3e-68 >seq25128 Length=30855 Score = 495 bits (548), Expect = 5e-135 Identities = 1210/1818 (67%), Gaps = 32/1818 (2%) Strand=Plus/Minus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 76862 || || ||||| || ||||| ||||| || || || || || |||| | ||||| Sbjct 20166 GCTGGCTTTGTGCGCAGATAATACATTCCTGTCTTGAGGCCTGCCTTCCACGAGAAGAAA 20107 Query 76863 TGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTT 76922 || ||| ||| | ||| || | || ||||| | ||||| || | || ||||| Sbjct 20106 TGAATGGATGTTAACTTGCCGTAGTTGGGTTCGGCAACGTGAATGTTGAATGATTGACTC 20047 Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 || || || ||||| || | |||||| ||||| || || | | ||| | |||||| Sbjct 20046 TGGTCAATAAAAGCACCGCGATCAGCTGCCATCTTGATGGTTGACTTCACCGAGATTTCC 19987 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGG--TTTG-TATTTTGAATGGAA 77039 || | |||||| ||| | | || | |||| | || | | ||||| ||||| Sbjct 19986 CAGACGGTTTTGTAAAGATCCCGTACTTCCTGAGGAATGGATTCGATGTTTTGTATGGAG 19927 Query 77040 CCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAA 77099 |||| | | || ||| |||||| || ||||||| ||| || | | || |||||| Sbjct 19926 CCACGACTGGCAATGATTTGATTCTTCATGTCATCATCCCATAAATCCAGTTCGGTTAAA 19867 Query 77100 ACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAA 77159 | | | | |||| |||| || | | || ||||| ||||| || | | |||||| Sbjct 19866 TCCCGCAACAAATGATGATTTACCACATTGAACTCTCCGGACAAAACGCGCCTGGTGTAA 19807 Query 77160 ATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCA 77219 || || ||||| || || | || ||||| || |||| || || |||||||| || Sbjct 19806 ATGTTTGAAGTATACGGCTCAAAGGACTCATTATTACCCATGATCTGGGCAGTAGATGCC 19747 Query 77220 GTTGGCATAGGTGCCACCAATAAACTA-TTTCTGAGACCATGTGTTCTGATTTTATCTTT 77278 || ||||| || ||||| || | | | ||||| | ||||| | ||||||| ||| Sbjct 19746 GTGGGCATTGGAGCCAC-AAGCAGCGAGTTTCTAACGCCATGCTCTTTGATTTTCAATTT 19688 Query 77279 TAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAAT 77338 |||| ||||||||||||| | || ||| ||||| | |||||| || ||||| Sbjct 19687 TAGAGCAGTCCAATCCCAAAGGTTTGTGGGTGTCTTGTCCCACATATCGTACTGCAGAAT 19628 Query 77339 TCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTC 77398 ||| || || | | ||| || |||||||| || || || ||| ||| || || Sbjct 19627 TCCCTTGCTCACCGGACAACCAGCGTAGGTTTCATAGGGACCGTCCTTTTGAGCCAGCTC 19568 Query 77399 ACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTG 77458 |||||| || || | || || || || || |||||||| |||| || |||||| | Sbjct 19567 ACAACTGGCCTCAAGGGCACCATAGTAGATGGTTTCGAAGATCTGCTGATTGAGCAATAC 19508 Query 77459 TGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 |||| ||| ||| | ||| | | | ||||| ||||| || || || |||||||| Sbjct 19507 GGCTTTGTCACTCTCATAGGGAAAGCGCATCAGAATTAAGGCGTCGGCAAAGCCCTGAAC 19448 Query 77519 TCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATA 77578 ||||| ||||| || | |||||| |||||| | || || || || | ||||| || Sbjct 19447 GCCAATGCCAATGGGACGATGTCTTAAATTGGATTTCTTTGCCTCGGGCAGCGGATAGTA 19388 Query 77579 ATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTT 77638 ||| || || || ||||| || | |||||| || |||| || ||||||||||| Sbjct 19387 ATTGATATCAATGATTTTGTTCAAATTTCTGGTGACAGTTTTAGTAACTTCCTTTAGTTT 19328 Query 77639 AAGAAAATCAAATCTTCCATCT---ATAACAAACATGTTCAAAGCTATAGATGCTAGATT 77695 ||||| ||| || ||| | |||||||| ||||| ||||| ||||| | ||| Sbjct 19327 CTTGAAATCGAATGTTTTCTCTGAAGTCACAAACATATTCAAGGCTATCGATGCCAAATT 19268 Query 77696 ACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACA 77755 || || || | ||||| | | ||||| | || ||||| || || || || || Sbjct 19267 GCAGACGGCAATCTCATCGGGTGCCGAATATTCAACAATTTCGGTGCAGAGGTTGCTGCA 19208 Query 77756 TTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAAT 77815 |||||| ||||| | ||| || || |||||||| | ||||| ||||| || | || || Sbjct 19207 TTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAAGAGTCTTTGAAGAGCAT 19148 Query 77816 AAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTT 77874 ||||||| || || |||| || ||||| | ||| | | ||| | || | | |||| Sbjct 19147 GTACGGAGTGCCAGTCTCAACTTGAGATTCAACAATGGCATACCA-AAGAGTTTGTGCTT 19089 Query 77875 TTATCATA-GATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCA 77933 | |||| | |||||| || | ||| || ||||| | ||||| ||| ||||| ||| Sbjct 19088 TAATCACACGATTTG-CGCGACCCTCGCTCTCATACTTTGTATACAGCTTCTCAAAGTCA 19030 Query 77934 TCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCA 77993 || |||||||| || ||||| || || || | | || |||| || ||||| || || Sbjct 19029 TCCCCCCAAACGTCTTCCAAGCCGGGACACTTGTGAGGACACAACAGCGACCAATCCTCA 18970 Query 77994 T---CTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCT 78050 | ||||| || || |||||||| ||||| |||||||| | || || ||||| Sbjct 18969 TTGGCTTCC---ACACGCTTCATAAACAGATCGGGTATCCACAAGGCGTAGAAGAGATCA 18913 Query 78051 CGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCA 78110 || | ||| || ||||| || || || |||||||| || || | ||||| | ||||| Sbjct 18912 CGAGCTCTGTGCTCTTCCTTGCCCGTGTTCTTTTTGAGGTCCAAGAACTCAAAGATATCG 18853 Query 78111 GAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCT 78170 |||||||| ||||| || || || || | | | || || || || || || ||||| Sbjct 18852 GAATGCCAAGGTTCCAGGTAAATGGCAAAAGCGCCTGGCCGCTTGCCGCCACCTTGATCG 18793 Query 78171 ATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCA 78230 | ||| | || |||||| | ||||| | ||| || | | ||| || || || ||| Sbjct 18792 ACATAACGAGCCACATTATTAAACACTCTGAGCATGGGCACCAAACCATTTGAAGTGCCA 18733 Query 78231 TTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT----CCCTAT 78286 || || ||| | || | | || | || |||||| |||| | || || || Sbjct 18732 TTAGTGCCACAGATCGAGGTGCCCTTGGCACGAATA----CAATGCACATTGAGTCCAAT 18677 Query 78287 TCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTAT 78346 || || || || || || | || || | | | | | | | || || || || Sbjct 18676 GCCACCAGCGGATTTGGAGATCATTGCACACTGCTCGACGGACTTGAAAATGCCTTCGAT 18617 Query 78347 ---ACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCC 78403 | | | |||| |||| ||||| ||||| ||||| || || || || | Sbjct 18616 GGAATCGGAAACCAT--TGTT-AGAAGGAAACACGATGACATCTGGGGACGATTGGTGGC 18560 Query 78404 TGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGT 78463 ||| ||||| || || |||||||||||||| | ||| || | |||||||| || Sbjct 18559 AGCAGCAAATAGCGTTGGCGATGCATGCGTAAAATAGCGTTCCGATAACAGATTGTAAGT 18500 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 || | ||| || || ||||| ||| ||||| | ||| || | ||||| ||| || Sbjct 18499 CTCGACAGCGGAATCGATGTCTTCGCCATGGATTCCAATCGCCACTCTCATCAGCATGTG 18440 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 ||| || | ||| | | || ||| || || | ||| || || || | || || Sbjct 18439 CTGCGGACGTTCGGCGATTTTGCCATTGATCTTTAGCAAATACGAACGCTCGAGGGTCTT 18380 Query 78584 AAAACCAAAATAGTTGTA 78601 || |||||||||||||| Sbjct 18379 GAAGCCAAAATAGTTGTA 18362 >seq19105 Length=237168 Score = 273 bits (302), Expect = 3e-68 Identities = 570/840 (68%), Gaps = 13/840 (2%) Strand=Plus/Plus Query 47839 TAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCA 47898 |||||||||| |||||||||||||| |||||||| || || |||||||| |||| Sbjct 36611 TAACTCCCATGCGCTGATATTCACCCACTTTCTTCTCGAAGAAGTTGGTTTTGCCATCCA 36670 Query 47899 ATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTA 47958 | || || | ||||| || |||||||| || || ||||| || | || | Sbjct 36671 AAGAGATCATCTCCATGAACGAGAATGGATTCTTTGTGTTGTAAATCTTGCCCACGCCAA 36730 Query 47959 ATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCA 48018 || | || | ||| || || || || |||||| ||||| |||| |||| Sbjct 36731 GCTCAACCAATAGGCGATCAGCGACAAACTCGATATATTCGGACATCAGAGCACAGTTCA 36790 Query 48019 TTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCAT 48078 | || || | || || || || || || || || ||||| || || ||||| ||||||| Sbjct 36791 TGCCAATCAAGTTGACGGGCAGCGCATCGGTGAGGAACTCCTGCTCAATAGTCACAGCAT 36850 Query 48079 CCACTATTAT--CGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACAT 48136 || ||| || | ||| | | |||| ||| || | | || |||||||| ||||| Sbjct 36851 CCGTTATGATTTCAATGATGCG--TTCCCGACTAGGCCGCTGCACCAAATGTTGGAACAT 36908 Query 48137 TAAACAT-GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATG 48195 || || ||||| |||||||| ||||||||||| | | || |||||||| || |||| Sbjct 36909 -AAGCACCGCAAAGTCACAATGCAGACCTTCATCGCGAGAGATCAATTCGTTGGAGAATG 36967 Query 48196 TGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAA 48254 | || || ||||| |||||||| || || ||||| || || | || |||| | ||| Sbjct 36968 TAAGTCCAGGCATAAGTCCACGCTTCTTCAGCCAGAAGATGGATGC-AAAGCTCCCACTG 37026 Query 48255 AAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG----CTTC 48310 ||||| |||||||| || || ||||| || ||| | || || | ||| |||| Sbjct 37027 AAGAAGATGCCTTCAACAGCAGCAAAAGCAATAATACGTTCACCAAAGTTGGCAGCCTTC 37086 Query 48311 GTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTAT 48370 | | | ||||| | ||||| || |||||| ||| ||| ||||| ||||| || Sbjct 37087 GAAGAG-ATCCAAGAAAGAGCCCAGTCTGCCTTCCGCTTAACAGCCGGCATCGTTTCAAT 37145 Query 48371 AGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACT 48430 ||||| |||||| ||| | | || ||| | | || || || || | | ||| Sbjct 37146 GGCATTGAAGAGATAGTCTCGCTGATGAGGATCCCTGATATAGGTGTCAATGAGCACACT 37205 Query 48431 ATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTC 48490 ||||||||||| || | ||| || || || ||||| || || ||||| || | || || Sbjct 37206 GTACATTTCGGAATGCACATTCTCCATGGCAATCTGGAAGCCATAAAAGCAACGTGCCTC 37265 Query 48491 TGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACT 48550 || | ||| || || | ||| ||||| ||| ||| || || || ||||||||| Sbjct 37266 GGTCACCTGCACTTCTTGGCTAAAACGTTCGACCAGATTTTCGTTAACAATTCCATCAGA 37325 Query 48551 AGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATT 48610 ||||||||| || || || ||||| || |||| || || || || || Sbjct 37326 AGCAGCAAAGAAGGCCAACACATGCGATATGAAATGACGCTCATTATCCGTAAGCTTGGC 37385 Query 48611 CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 ||| ||| | || || || || | ||| |||||||| | ||||| || ||||| || || Sbjct 37386 CCAATCAGTCATGTCCTTGGACAGATCCACTTCTTCGACGGTCCAGAACGATGCTTCAGC 37445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694439958730560