Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq4621 102 3e-17 seq16043 87.8 6e-13 >seq4621 Length=3921 Score = 102 bits (112), Expect = 3e-17 Identities = 206/298 (69%), Gaps = 11/298 (4%) Strand=Plus/Plus Query 40083 CCGAAGGTCCCGATCTGTGCGACCTTG--TCCGCCCCGTACTTCTCGGTGACGTACCTGA 40140 |||||||| |||||| || || | |||||| ||| | |||| || || | || Sbjct 450 CCGAAGGTAATGATCTGCGCCACACGGCTTCCGCC--GTATTCCTCGCGCACATAACGGA 507 Query 40141 TCACGTCGCCCCGTCG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCG 40198 |||| || | || || || | || ||| ||||| || | || ||||||||||| || Sbjct 508 TCACCTCATCGCGACGATCCTGACA--GAAATCGATATCGAAATCCGGCATGGACACACG 565 Query 40199 CTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGAT 40258 ||||||||| || |||| ||||| | | || ||| ||||| || | || || || Sbjct 566 CTCGGGGTTTAGAAACCTTTCGAACAGCAATCCAAACGGAATGGGATCAATATCCGTAAT 625 Query 40259 -GCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACA 40317 | | ||| ||||| || || || || || | || |||||||| || |||||| | Sbjct 626 CGTCAGCGCA-TAGGCAACAAGTGACCCTGCGCCTGACCCACGTCCCGGGCCGACCGGAA 684 Query 40318 CGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAA 40375 | ||| | | || ||||| || |||||||| |||| ||||||||| | |||||| Sbjct 685 TGTCGTGCGCTTTCGCCCACTGAATAAAGTCGGCAACGATCAGGAAGTA-GCCGGGAA 741 >seq16043 Length=246680 Score = 87.8 bits (96), Expect = 6e-13 Identities = 236/355 (66%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 40036 CCAGCACGCGCGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGACCGAAGGTCCCGA 40095 ||||||| ||| || |||| || ||| |||||||| | | || || || | Sbjct 112240 CCAGCACACGCCCCACGTCACGCACCGCTGCGCGCGCCTGCAACTTTCCAAAAGTGATAA 112181 Query 40096 TCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTG-ACGTACCTGATCACGTCGCCCCGT 40154 |||| || || ||| | |||||| ||| || | || || ||||| ||| | || Sbjct 112180 TCTGCGCCACACGGTCGGGCCCGTA-TTCCCGACGCACATAGGCAATCACCTCGTCACGC 112122 Query 40155 CG--CCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGA 40212 || || | || ||| || || |||| ||| ||||||||||| || ||||||||||| | Sbjct 112121 CGGTCCTGACA--GAAATCAATATCAAAGTCAGGCATGGACACACGTTCGGGGTTCAGAA 112064 Query 40213 ACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGG 40272 |||||||||| | || | || || ||||| | || || ||| || | | Sbjct 112063 ACCGCTCGAACAGCAGGTTGAAGGGAATAGGGTCAATATCCGTAATGGTCAGCGCCCACG 112004 Query 40273 CGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGG 40332 || |||| || || || | || ||||| || || || ||| | | | | |||| Sbjct 112003 CGGCCAGAGAGCCTGCGCCGGACCCACGGCCCGGCCCCACCGGGATATCATGCGCCTTCC 111944 Query 40333 CCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCA-GCTGGA 40386 |||| ||| ||||| || |||| || |||||| ||||| |||| |||||| Sbjct 111943 CCCACTGGATAAAGTCCGCCACGATCATGAAGTAACCGGGGAAGCCCATGCTGGA 111889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160090683336112