Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq9879 185 6e-42 seq7620 134 9e-27 seq25381 111 1e-19 >seq9879 Length=9070 Score = 185 bits (204), Expect = 6e-42 Identities = 461/688 (67%), Gaps = 44/688 (6%) Strand=Plus/Minus Query 58729 CAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCC 58788 |||||| | |||| | ||||||| |||| ||| | ||| || | |||||| || Sbjct 5636 CAGGTTCATGCCGGCGATCCGGTAGTGCTGTCCTTCGGCGGACCGGTCGCGGATTTCGCC 5577 Query 58789 AAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCC 58848 |||| | |||| | |||| ||||| | |||| ||||| ||||| || || Sbjct 5576 CCGGCGATGGAAGCTGATGGCCCGCTTCAGCGCATGATGCGCTTCACCCTTGTTGAGACC 5517 Query 58849 GGCATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCG 58908 | || ||||||| |||| || || | | |||||| | ||||||| |||||| Sbjct 5516 GATCTGGGCGCGGCGTTGCAGATCGGCATCCAGAATCCAGTCGATCATGAACAACGTGCG 5457 Query 58909 CTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCC 58968 ||||| ||||| | ||||||||| ||| ||| ||| ||||||| | ||| ||| | | Sbjct 5456 CTCGACGCGGCCGACCTCGCGCAGAGCCGTGGCAAGTTCGTTCTGCCTCGGATAGGAGGC 5397 Query 58969 GAGCTTGCGCAGCATCAGCGAGGCGGTGACGGTGCCCTGCTTGATCGAGCTGGCCAGGCG 59028 |||||||||||| ||| | || | |||| | || | ||| | ||| | ||| Sbjct 5396 GAGCTTGCGCAGAATCTGGCTGGGCGCGACGCTCCCAGCCGCGATGGTCGCGGCGATGCG 5337 Query 59029 CAGGATGTCGTCCCAG-TGGGCACG--CA---CGTGCTTGATGTTCAGGGTGCCGCCGAT 59082 |||||||||| |||| || || || || | || ||||| ||| || ||||| Sbjct 5336 CAGGATGTCGGGCCAGTTGCGCTCGATCATGGCCTGATTGATCTTC------CCACCGAT 5283 Query 59083 CAGCGGGCGCAA---CGTCGG-GTA------GGCTTGCACGCCCTGCGGCACGTACAGCT 59132 || | ||||| || ||| ||| || ||| |||| | | | ||| Sbjct 5282 CAAGGCCCGCAAGTGCGCCGGCGTAGCCGATGGATTGAACGCATAGAG-------CCGCT 5230 Query 59133 TGGTTTCGCCGAGGTCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCA-GGTGCATCAGG 59191 ||| || | ||||| ||||| ||||| ||||||||| |||| || | ||||||| | Sbjct 5229 TGG--ACGGC-AGGTCACGGATACGCGGGGCGAAGCGGTAGCCGAGAATGGTGCAT-GCG 5174 Query 59192 GCAAAGACGTGATCGGTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTCG 59251 |||||||||||||||||||||||| | ||||||| | | ||||| ||| | || | Sbjct 5173 GCAAAGACGTGATCGGTGAAGCCGCCTGTGTCGGCGAACTGCTCGCGGATATGACGGCCA 5114 Query 59252 GACTCGTGGTACAGCAGGCCGTCGAGCACATAGGTGGAATCGC-GGACGCCGACATTCAC 59310 | |||| |||| ||||||||| | ||||| | |||| | || || | | Sbjct 5113 GCATCGTTCATGAGCAAGCCGTCGAGGATATAGGGCGCTTCGCTTGCCGTCG-CGGGGAT 5055 Query 59311 CACGCGGGTGCTGAACGGCGCGTACTGGTCGGAGATATGGGTATAGAACAGCCGT----C 59366 ||| |||| || |||||| || |||||||||| |||| | || |||| | | Sbjct 5054 CACCTGGGTCGCGAGCGGCGCATATTGGTCGGAGACATGGCTGTA----AGCCTTCAAGC 4999 Query 59367 CCGGCTCGCTACCGTACTTCGGGTTGAC 59394 ||||| | ||||| |||| |||||| Sbjct 4998 CCGGCATATTGCCGTATTTCGCGTTGAC 4971 >seq7620 Length=8123 Score = 134 bits (148), Expect = 9e-27 Identities = 241/351 (69%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 58699 CGTGTTCCACAGCACGATAGCCGCCGTCACCAG---GTTGAGGCCGCTGGCCCGGTAGCG 58755 ||| ||||| || |||| |||| | |||||| ||| | || ||||| || Sbjct 4152 CGTATTCCATAG---GATAACCGCTGCCACCAGCAGGTTTAAACCTGACGCCCGATAAGC 4096 Query 58756 CTGCTGCTCGAAGCTCCGATCCCTGATTTCCCCAAGGCGGTTGAAGAACACCGCCCTGGC 58815 ||| | || || | |||||||| | ||| ||||| |||||||||| | ||||| || Sbjct 4095 CTGATTTTCAAAACGCCGATCCCGCAGTTCACCAAGCTGGTTGAAGAAGAGCGCCCGAGC 4036 Query 58816 CAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCCGGCATGCACGCGGCGGCGCAGTTCAAC 58875 ||||| || || || || || ||||| || || || || || | ||||| || | Sbjct 4035 CAGCGCATTCCGGGCTTCTCCCTTGTTGAGCCCTGCCTGGGTTCGCCTGCGCAAATCCAG 3976 Query 58876 ACTTTGCAGCCAGTCCAGGATGAACAGCGTGCGCTCGATCCGGCCCAGCTCGCGCAGGGC 58935 | || | |||||| || ||||| | || |||||||||||||| | || |||| ||| Sbjct 3975 ATCCTGTATCCAGTCGAGCATGAAAACCGACCGCTCGATCCGGCCAACTTCACGCAAGGC 3916 Query 58936 CACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCCGAGCTTGCGCAGCATCAGCGAGGCGGT 58995 || ||||| || ||||| || || || |||||||| |||||||| ||| || || Sbjct 3915 AACAGCCAGACCATTCTGACGGGGATAAGATCCGAGCTTCCGCAGCATAGCCGAAGCCGT 3856 Query 58996 GACGGTGCCCTGCTTGATCGAGCTGGCCAGGCGCAGGATGTCGTCCCAGTG 59046 ||||| || | || || | | || ||||| | ||||||||||| Sbjct 3855 CACGGTTCCACTCCGAATGGATGTAACGAGACGCAGCAGATCGTCCCAGTG 3805 >seq25381 Length=3037 Score = 111 bits (122), Expect = 1e-19 Identities = 178/256 (70%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 58729 CAGGTTGAGGCCGCTGGCCCGGTAGCGCTGCTGCTCGAAGCTCCGATCCCTGATTTCCCC 58788 |||||| | |||| | ||||||| |||| ||| | ||| || | |||||| || Sbjct 1805 CAGGTTCATGCCGGCGATCCGGTAGTGCTGTCCTTCGGCGGACCGGTCGCGGATTTCGCC 1746 Query 58789 AAGGCGGTTGAAGAACACCGCCCTGGCCAGCGAGTTGCGCGCCTCACCTTTGTTCAGGCC 58848 |||| | |||| | |||| ||||| | |||| ||||| ||||| || || Sbjct 1745 CCGGCGATGGAAGCTGATGGCCCGCTTCAGCGCATGATGCGCTTCACCCTTGTTGAGACC 1686 Query 58849 GGCATGCACGCGGCGGCGCAGTTCAACACTTTGCAGCCAGTCCAGGATGAACAGCGTGCG 58908 | || ||||||| |||| || || | | |||| | | ||||||| |||||| Sbjct 1685 GATCTGGGCGCGGCGTTGCAGATCGGCATCCAGAATCCAGGCGATCATGAACAACGTGCG 1626 Query 58909 CTCGATCCGGCCCAGCTCGCGCAGGGCCACGGCCAGTCCGTTCTGGCGCGGGTAGCTGCC 58968 ||||| ||||| | ||||||||| ||| ||| ||| ||||||| | ||| ||| | | Sbjct 1625 CTCGACGCGGCCGACCTCGCGCAGAGCCGTGGCAAGTTCGTTCTGCCTCGGATAGGAGGC 1566 Query 58969 GAGCTTGCGCAGCATC 58984 |||||||||||| ||| Sbjct 1565 GAGCTTGCGCAGAATC 1550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330792918692764