Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq20348 113 1e-19 seq25099 93.3 1e-13 seq24486 91.5 3e-13 >seq20348 Length=30608 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||||||||||||||| |||||||||| | ||| | ||||||||| | || ||| Sbjct 12889 GTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTCCAATTGCTTGCCG 12830 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| | | ||| || || | | |||||||| || || ||||| || |||| Sbjct 12829 GCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTG 12770 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | | | || || || || |||||||| || || || |||||||| || Sbjct 12769 ACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGTT 12710 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||||| ||||| Sbjct 12709 TTAACGAAGATTTGCAT 12693 >seq25099 Length=83779 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| |||||| | ||||| || |||||||| || ||||| ||||| | | || | Sbjct 21199 GAGTCGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATAATCAGAAAGGGTGCG 21258 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || ||||||||||| || | |||||| || | | ||||||||| Sbjct 21259 ACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCTGGAGGGATTCCTTC 21318 Query 152006 CTTTTCTTGAATTTT--TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||| ||||| || || || ||| |||| | | | || ||| |||||||| || Sbjct 21319 CTTATCTTGGATCTTGGCCNCTTCACATTCTCAATGGTATCAGAAGGTTCTACTTCCAGG 21378 Query 152064 GTAATAGTTTTGCCCGTGAG 152083 || || || || || || || Sbjct 21379 GTGATGGTCTTTCCGGTCAG 21398 >seq24486 Length=213816 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || ||||| || ||||||||||| |||| | ||| | ||||| || || || || Sbjct 88341 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCCAGCTGCTTGCCA 88282 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| || | ||| || || | | ||||| ||||| || || || || ||| Sbjct 88281 GCGAAGATCAGACGCTGTTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTG 88222 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| |||| | | |||| || ||| || || | || || || ||||| || | || Sbjct 88221 ACATTCTCGATGGTGTCAGAGGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTT 88162 Query 152088 TTCACGAAGACCTGCATTTT 152107 |||||||||| |||||||| Sbjct 88161 TTCACGAAGATTTGCATTTT 88142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153431200147534