Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq20348 178 3e-39 seq24486 165 2e-35 seq18322 111 3e-19 seq25099 107 4e-18 seq14047 96.9 7e-15 seq21432 95.1 3e-14 seq17410 95.1 3e-14 >seq20348 Length=30608 Score = 178 bits (196), Expect = 3e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || |||| || || || ||||||||||| ||||| || | Sbjct 12920 ACCACCGCGAAGGCGGAGCACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGA 12861 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||| || | ||| || ||||||||||||||||| ||||| || || Sbjct 12860 AAGAGTGCGCCCATCTTCCAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGG 12801 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || ||||| || ||||| ||||| || | ||||| || ||||| | |||||| Sbjct 12800 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGAC 12741 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| ||||||||||| | || |||||||| || ||||| Sbjct 12740 CTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq24486 Length=213816 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||||||||| || || |||| || || || || || |||||||||||||| | Sbjct 88372 ACCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGA 88313 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||||||||| || || || || || ||||||| ||| ||||| || || Sbjct 88312 CAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGGGG 88253 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| || || || | ||||| ||||| || | || || Sbjct 88252 AATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCCAC 88193 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||| ||||| || ||||| || || ||||| || |||||||| Sbjct 88192 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCATTTT 88142 >seq18322 Length=84725 Score = 111 bits (122), Expect = 3e-19 Identities = 346/530 (65%), Gaps = 12/530 (2%) Strand=Plus/Plus Query 273525 TTGTACCACGGCTTCATGGCTACCATAGGTTCACCCTTCATCAGTCGCTCCACATTACCA 273584 ||||||||||| |||| | | ||||| || || |||| || | ||| || Sbjct 71250 TTGTACCACGGAATCATTGTTGTTTGCGGTTCGCCGTTGATCATGCGACGTAAATTCTCA 71309 Query 273585 ATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCAATACCGGAA 273644 ||||| || |||||||||| | | | || || ||||| ||||| |||||||| | Sbjct 71310 ATAATTTCGCGAGGGTTGTAATTAGCTATTTTAGTTGACCAGCCGGTACCAATACCTTCA 71369 Query 273645 GAACCATTCACCAGAATAC--TCGGGATAATTGGGACATAATATTCGGGCTCAATTTTAT 273702 | || || || ||||| | || ||||| || | ||| || ||||||||||| | Sbjct 71370 GCGCCGTTGAC--TAATACCATGGGTATAATAGGTATATACCATGTCGGCTCAATTTTTT 71427 Query 273703 CACCATCGTCGTAAAGGTACTTCAACAAAGCATCATCCGTATCAACGAAAACCTTTCGCG 273762 ||||||||| | |||| || || | ||||||| | | ||||| || | Sbjct 71428 GGCCATCGTCGACCTGATACTGCATTAATGGATCATCCAAAGGATGGAAAATGAGACGTG 71487 Query 273763 TCTGAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCA 273822 | | || || | ||||||||||||| | || || ||| || || ||||| | Sbjct 71488 TTAGTGGCGACATTATCGTGAAAATGTAACGAGCGCTTGCACAATCTTTTCCACCGGTGA 71547 Query 273823 GCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAAT 273882 | | | ||| || ||||| ||| || | | || |||||||| || || || | Sbjct 71548 GACGAGTACCGAATTGACCGCGTGGCTCTAACAAATTAATGTTGTTCGATCCCACATAGT 71607 Query 273883 CCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTG- 273941 ||| |||| |||||| || ||| || || || || || || || ||||| || || Sbjct 71608 TCTGCGCCAAATTCACAATGGTCATTTGCAGCGAGACTTCACCATGATGATA--CGATGA 71665 Query 273942 -TGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACAT--CGCTCGTCAAGTTTCGC 273998 |||||| | |||| | ||| |||||||| || | |||| ||| ||| ||| Sbjct 71666 CATTTCGGCAACGGAACCCGACAGCTGGGCAACCTTAACTTCACGCTTGTC--GTTACGC 71723 Query 273999 TTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAAC 274048 || || | | ||| ||||||||||| ||||| || ||||| || Sbjct 71724 TTAAAACACGTAAACATAACCTTCCGCTGACCAGGCTTTAAGCCATCTAC 71773 >seq25099 Length=83779 Score = 107 bits (118), Expect = 4e-18 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || ||||| || |||| ||| ||||| |||||||| || || || ||||| ||| Sbjct 21227 TCTTTCTGAATGTTATAATCAGAAAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 21286 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGC--TTTTACGG 283026 || | ||| || || || || || || ||||| ||||||||||| || || || Sbjct 21287 ATGAGACGCTGCTGATCTGGAGGGATTCCTTCCTTATCTTGGATCTTGGCCNCTTCACAT 21346 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCA 283077 | || || || || |||| ||| ||||| || ||||| ||||| || |||| Sbjct 21347 TCTCAATGGTATCAGAAGGTTCTACTTCCAGGGTGATGGTCTTTCCGGTCA 21397 >seq14047 Length=15719 Score = 96.9 bits (106), Expect = 7e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | || ||| ||||| || ||||| || | Sbjct 15698 ACCACCACGTAGTCGGAGGACCAAGTGAAGTGTCGATTCCTTTTGAATATTGTAATCTGA 15639 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| |||||||| || || || ||||| ||||||| ||| || || || || Sbjct 15638 AAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 15579 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 || || || |||||||||||||| || || || Sbjct 15578 GATTCCTTCTTTGTCTTGGATCTTGGCCTTCAC 15546 >seq21432 Length=7262926 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 2155356 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 2155412 >seq17410 Length=23049 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 10108 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 10164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046385757387516