Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq20348 136 3e-27 seq24486 131 1e-25 seq25099 100 2e-16 seq14047 84.2 2e-11 >seq20348 Length=30608 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| | || ||| |||||||| |||||||||| || |||| | || || Sbjct 12902 CACCAAGTGCAATGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTGCGCCCATCTTC 12843 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| |||||||||||||||||||| ||||||| ||| | ||||| || ||| Sbjct 12842 CAATTGCTTGCCGGCAAAGATCAAACGCTGTTGATCTGGAGGAATTCCTTCTTTGTCCTG 12783 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| || | || | ||||| || | | ||| ||||| | || || ||||| Sbjct 12782 AATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 12723 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||||| || |||||||||||||| Sbjct 12722 ACCCGTGAGGGTTTTAACGAAGATTTGCAT 12693 >seq24486 Length=213816 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 || || || | ||| | || ||||| ||| | || |||||| ||||||||||| ||| Sbjct 88374 ATACCACCACGCAGACGCAGCACCAAGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCG 88315 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 | || ||| | || ||||||||||| || || ||||||| |||||| ||||||| Sbjct 88314 GACAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGATCTGGG 88255 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | || ||||| ||| ||||| ||| | | | |||||||| | || ||| Sbjct 88254 GGAATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCC 88195 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || ||||| || || | ||| ||||||||||||||||| Sbjct 88194 ACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTTTTCACGAAGATTTGCAT 88145 >seq25099 Length=83779 Score = 100 bits (110), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || |||| |||| | |||| |||||| || ||| || || ||||| || Sbjct 21184 TTGCATACCGCCTCGGAGTCGGAGGACCAAGTGAAGGGTCGACTCTTTCTGAATGTTATA 21243 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| | || ||| | || ||||||||||| ||||| ||||| | |||||||||||| Sbjct 21244 ATCAGAAAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATC 21303 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTT--CTGCTTCAATGTTCCTATGGTGTCGGCG 44281 || ||| | |||||||| || ||||| | ||||| | | ||||| || | Sbjct 21304 TGGAGGGATTCCTTCCTTATCTTGGATCTTGGCCNCTTCACATTCTCAATGGTATCAGAA 21363 Query 44282 GATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGG 44317 | ||| || |||| || || |||||||| || ||| Sbjct 21364 GGTTCTACTTCCAGGGTGATGGTCTTTCCGGTCAGG 21399 >seq14047 Length=15719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||||| || |||||||| | || ||| | || ||| Sbjct 15679 ACCAAGTGAAGTGTCGATTCCTTTTGAATATTGTAATCTGAAAGAGTGCGACCATCCTCC 15620 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||||||| ||||| ||||||| |||||||||||||| || | ||||| || || Sbjct 15619 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCTTCTTTGTC 15564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359874774908418