Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20albomicans_20[genbank_20GCA_5F000298335.1_202012-09-19] 26,354 sequences; 253,560,284 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq20348 163 7e-35 seq24486 143 6e-29 seq25099 120 7e-22 seq14047 107 5e-18 >seq20348 Length=30608 Score = 163 bits (180), Expect = 7e-35 Identities = 160/205 (78%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| ||||| || || || ||||| || ||||| ||| || || Sbjct 12696 CAAATCTTCGTTAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 12755 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| ||||||||||||||||||||||| ||||| || || || Sbjct 12756 ACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAACAG 12815 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| ||||| || || | |||||||| | |||||| ||||||| || || Sbjct 12816 CGTTTGATCTTTGCCGGCAAGCAATTGGAAGATGGGCGCACTCTTTCCGATTACAATATC 12875 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| || ||| |||| |||| Sbjct 12876 CAAAAAGAGTCTACATTGCA-CTTG 12899 >seq24486 Length=213816 Score = 143 bits (158), Expect = 6e-29 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971 || ||||||| |||| ||||||||||| | || || || || |||||| | |||||| Sbjct 88139 GTCAAAATGC---AAATCTTCGTGAAAACCTTGACTGGCAAGACCATCACCTTGGAGGTG 88195 Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 || ||| |||||||||||||| ||||| ||||| |||||||| || ||||| || Sbjct 88196 GAGCCCTCTGACACCATCGAGAATGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCC 88255 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC 178091 || || || || || || |||||||| || || ||||| || ||||| | ||||| || Sbjct 88256 CCAGATCAACAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCC 88315 Query 178092 GATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || || ||| |||| || || || || |||| |||| Sbjct 88316 GACTACAACATCCAGAAGGAGTCGACCTTGCA-CTTG 88351 >seq25099 Length=83779 Score = 120 bits (132), Expect = 7e-22 Identities = 141/189 (75%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 177942 CTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAA 178001 || || ||||| || |||||||| || || ||| || || ||||| ||||| || || Sbjct 21398 CTGACCGGAAAGACCATCACCCTGGAAGTAGAACCTTCTGATACCATTGAGAATGTGAAG 21339 Query 178002 CAA--AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCG 178059 ||||| || || || |||||||||||||| || ||||| || || |||||||||| Sbjct 21338 NGGCCAAGATCCAAGATAAGGAAGGAATCCCTCCAGATCAGCAGCGTCTCATCTTCGCCG 21279 Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACAC 178119 | || ||||| || ||||| | || ||| | ||||||||| | || ||||| || || | Sbjct 21278 GCAAGCAGCTGGAGGATGGTCGCACCCTTTCTGATTATAACATTCAGAAAGAGTCGACCC 21219 Query 178120 TGCATCTTG 178128 | || |||| Sbjct 21218 TTCA-CTTG 21211 >seq14047 Length=15719 Score = 107 bits (118), Expect = 5e-18 Identities = 99/124 (80%), Gaps = 1/124 (1%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| || ||||||||||||||||| || || ||||| || || ||||||||||| || Sbjct 15555 AAGATCCAAGACAAAGAAGGAATCCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 15614 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | |||||| | ||||| || | ||||| ||||| ||||| || Sbjct 15615 CAGCTGGAGGATGGTCGCACTCTTTCAGATTACAATATTCAAAAGGAATCGACACTTCA- 15673 Query 178125 CTTG 178128 |||| Sbjct 15674 CTTG 15677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203324747370676