Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq6467 102 7e-17 >seq6467 Length=13775 Score = 102 bits (112), Expect = 7e-17 Identities = 274/413 (66%), Gaps = 12/413 (3%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 ||||| || || || |||| || ||||||||| | || ||||| || || ||| || Sbjct 9230 GGGGATCTGGGTCCAGTTTATGGATTCCAGTGGCGTCACTTTGGCGCCGAGTATCGC-AC 9172 Query 18849 TGTCAATCAAACTATTT-ACAG--CAAGGAATCGATCAGCTGCAAACTGTTATAGATACA 18905 | | || | | ||| || | || || || || || | ||| || ||| |||| Sbjct 9171 TTGCGATGA--CGATTACACCGGCCAGGGTATTGACCAATTACAACAAGTGATACATACG 9114 Query 18906 ATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 ||| ||| || || || || || || || || | |||||||| | |||||| Sbjct 9113 ATTCGAACTAATCCCTCGGATCGTCGCATTATCATGTCCGCCTGGAATCCGATGGATATA 9054 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTT--GCA----AAC 19019 ||| ||||| ||||| || || || || |||||| | || ||| || Sbjct 9053 CCCAAAATGGCGCTACCGCCGTGCCATTGCCTAGTTCAGTTCTTTGTCTCGCAGTCCAAG 8994 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || ||||| |||||||| |||| ||| | | || |||||||| || || || ||| Sbjct 8993 GGCGAATTGTCCTGCCAGCTATATCAGCGCAGTGCTGACATGGGCCTCGGCGTTCCCTTC 8934 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC 19139 |||||||| || || || || ||||| || |||| ||||| || || || || || Sbjct 8933 AACATTGCCTCCTACGCTCTGCTCACCTATTTAATAGCCCATGTGACGGGTCTGAAGCCC 8874 Query 19140 GGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGA 19192 || || || || || || || || ||||| || |||| | || |||||||| Sbjct 8873 GGCGAATTCATCCACACCATAGGCGATGCTCACGTTTATCTCAACCATATAGA 8821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399463767824835