Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq4921 138 1e-27 seq134 116 4e-21 >seq4921 Length=55175 Score = 138 bits (152), Expect = 1e-27 Identities = 168/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 40677 AACGCTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGA 40736 |||||| ||||| ||||||| || || ||||| ||||| ||||| ||||||||| | || Sbjct 52086 AACGCTTGGAAAA-TGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGA 52144 Query 40737 CGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCAT 40796 ||||| || | |||| | | | | |||||| ||||| | |||||||| || || Sbjct 52145 GGTCGAGCCCTCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTAT 52204 Query 40797 CCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCT 40856 || | || ||||| || | |||| || ||||| |||||||| || | |||||||| Sbjct 52205 TCCACCAGATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCT 52264 Query 40857 CAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||||||||| | || |||| | ||| |||| Sbjct 52265 TTCGGACTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTGCTGCG 52312 >seq134 Length=44313 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || | || ||||| ||||||||| | || || || |||| | Sbjct 29079 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCCATC 29021 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || || | ||||| |||||||| ||| | || || Sbjct 29020 CGATACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 28961 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| || | || ||| | ||||||||| Sbjct 28960 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACCTTGTCCGACTACAA 28901 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| |||| | || |||| || | ||||| Sbjct 28900 CATCCAGAAGGAGTCCACTTTGCACTTGGTTCTGCGTCTGCGTGGCGG 28853 Score = 113 bits (124), Expect = 5e-20 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| || || | || ||||| ||||||||| | || || || | Sbjct 29917 GAAATATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-G 29859 Query 40745 CCA-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 ||| |||| | | | | | | |||| || || | ||||| ||||| || ||| | Sbjct 29858 CCATCCGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCA 29799 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || ||||| || | |||| ||| ||||| ||| |||| || | |||||| | |||| Sbjct 29798 GATCAGCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGAC 29739 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||||| |||| |||| Sbjct 29738 TACAACATCCAGAAGGAGTCCACTTTGCA 29710 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || | || ||||| ||||||||| | || || || |||| | Sbjct 29307 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCCATC 29249 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || || | ||||| |||||||| ||| | || || Sbjct 29248 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCA 29189 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| || | || || | ||||||||| Sbjct 29188 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAA 29129 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 29128 CATCCAGAAGGAGTCGACCCTTCATCTGGT 29099 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || | || ||||| ||||||||| | || || || |||| | Sbjct 29684 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGA-GCCATC 29626 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | | | | |||| || || | ||||| ||||| || ||| | || || Sbjct 29625 CGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 29566 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| ||||| |||||||| || | || || | ||||||||| Sbjct 29565 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAA 29506 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||||||| | || || ||||| || Sbjct 29505 CATCCAGAAGGAGTCGACCCTTCATCTGGT 29476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515165984296880