Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4921 120 3e-22 seq134 113 4e-20 seq5580 104 2e-17 >seq4921 Length=55175 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||| | || ||||| || || |||||||| || Sbjct 52326 TACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCCG 52267 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| |||||| ||||| || || || |||| | |||||||||||| || | Sbjct 52266 AAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGTG 52207 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||| || || | |||| |||||| | | ||||| Sbjct 52206 GAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGA 52147 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || |||||||| || ||||| ||||| || ||||| Sbjct 52146 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 52098 >seq134 Length=44313 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || || || |||||| Sbjct 28871 ACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCCTCC 28930 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| | |||||||||||| || || |||||||||||||| Sbjct 28931 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 28990 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | |||| ||| || | ||| ||||| | ||| | || ||| Sbjct 28991 ATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTG 29050 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||| || || || || ||||||||| Sbjct 29051 CCAGTCAAGGTCTTGACGAAGATCTGCATG 29080 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| ||| || ||||| |||||| Sbjct 29703 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTC 29762 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || |||||| |||| | |||||||||||| || || || ||||||||||| Sbjct 29763 CAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 29822 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||||| | || | ||| || | ||| ||||| | ||| | || || Sbjct 29823 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 29882 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || || || |||||||| Sbjct 29883 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 29912 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||| || |||||| ||||| || || Sbjct 29111 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCG 29170 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||||||| || || |||||||||||||| || || ||| Sbjct 29171 GCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTA 29230 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | ||| ||||| | ||| | || ||||| |||| || Sbjct 29231 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 29290 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 29291 TTGACGAAGATCTGCATG 29308 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||| || |||||| ||||| || || Sbjct 29488 GTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCG 29547 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | |||||||||||| || || || ||||||||||| || || ||| Sbjct 29548 GCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTA 29607 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | ||| || | ||| ||||| | ||| | || ||||| |||| || Sbjct 29608 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 29667 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 29668 TTGACGAAGATCTGCATG 29685 >seq5580 Length=51276 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | || |||||||| || || ||||| || | ||||| ||| || Sbjct 19545 CACCAAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTC 19486 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| | || | |||||||||||| ||||| || || || ||||| Sbjct 19485 CAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 19426 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || |||||| | |||| ||| |||| |||||||| | || | || || Sbjct 19425 GATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 19366 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||||||||| ||||| Sbjct 19365 ACCCGTGAGGGTTTTTACAAAAATTTGCAT 19336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433786710973996