Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5580 104 3e-17 seq6000 96.9 4e-15 seq5992 95.1 1e-14 seq6002 93.3 5e-14 seq5994 93.3 5e-14 seq4921 89.7 6e-13 >seq5580 Length=51276 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||||||||| ||| ||| || || |||||||| |||| || || || | || || Sbjct 19545 CACCAAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTC 19486 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| |||||||| || | |||||||| || | || | | || |||||| Sbjct 19485 CAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 19426 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || ||| | || | | || || || ||| || || | |||||||| || Sbjct 19425 GATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 19366 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || |||||||| |||||||| Sbjct 19365 ACCCGTGAGGGTTTTTACAAAAATTTGCAT 19336 >seq6000 Length=14597 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/82 (87%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 6574 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 6633 Query 60124 TATACTACCGAGGA--TTGAAT 60143 ||||||| |||||| |||||| Sbjct 6634 TATACTATCGAGGATGTTGAAT 6655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 5062 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 5003 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 5002 CTATACTATCGAGGA 4988 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 6046 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 5987 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 5986 TATACTATCGAGGA 5973 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5585 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5526 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 5525 ATACTATCGAGGA 5513 >seq5992 Length=44367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/81 (86%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 11734 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 11675 Query 60125 ATACTACCGAGGA--TTGAAT 60143 |||||| |||||| |||||| Sbjct 11674 ATACTATCGAGGATGTTGAAT 11654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || |||| |||| || | |||||| |||||| ||||||||||||||||||||| |||| Sbjct 12455 AACAATTACCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 12514 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||| ||||||| Sbjct 12515 TAACCACTATACTATCGAGGAT 12536 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 13101 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 13042 Query 60124 TATACTACCGAGGAT 60138 ||||||| ||||||| Sbjct 13041 TATACTATCGAGGAT 13027 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 12061 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 12002 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 12001 TACTATCGAGGAT 11989 >seq6002 Length=4827 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 391 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 450 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 451 ATACTATCGAGGAT 464 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 73 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 14 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 13 ATACTATCGAGGA 1 >seq5994 Length=69906 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 14207 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 14148 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 14147 ATACTATCGAGGAT 14134 >seq4921 Length=55175 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| ||||| || |||||| || || ||||| || | || || || | Sbjct 52313 ACGCAGCACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCC 52254 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || || | |||||||| || | || | | || || Sbjct 52253 ATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTT 52194 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| |||||| |||| || | | ||||| | || || || | ||||| Sbjct 52193 GTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGAT 52134 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| ||||| || || || || ||||||||||||||||| Sbjct 52133 GGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCATTTT 52095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571758538389640