Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq6467 105 6e-18 >seq6467 Length=13775 Score = 105 bits (116), Expect = 6e-18 Identities = 226/332 (68%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 20777 TCAAACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACTCAGATC 20836 |||||||||||||||||| || || ||| | ||||||| |||| ||||| Sbjct 8667 TCAAACGGCCATCTCCATTGGAATCGTCTTATCGGGATTGTAGCCCACGAGTTCAAGATC 8726 Query 20837 CGCGC-GCGTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAAACG 20895 || ||| ||||||||| | | | |||| | | ||| || ||| ||||| | Sbjct 8727 TTCGTAGCG-AAAGTCCTCAATATTTGTAACCTGGCGCTTAATGTTGAGCTTGGGAAAGG 8785 Query 20896 GACGCGGGGTCCTCCGC---AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGT 20952 | | |||| || || | ||| || ||| || || | |||||| ||||||| Sbjct 8786 G-CTTGGGG--CTACGTTTTATCTGCTGCTCCAGCGGTTCTATATGGTTGAGATAAACGT 8842 Query 20953 GGGCGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCA 21012 | || || || | |||||| | || || || || |||| ||||| || || || || | Sbjct 8843 GAGCATCGCCTATGGTGTGGATGAATTCGCCGGGCTTCAGACCCGTCACATGGGCTATTA 8902 Query 21013 GATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGG 21072 ||| || || || |||||| ||| ||||| || || || |||||||||||||| || Sbjct 8903 AATAGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGAACGCCGAGGCCCATGTCAGCAC 8962 Query 21073 ACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 | ||| || ||||||||||||| || ||| Sbjct 8963 TGCGCTGATATAGCTGGCAGGACAATTCGCCC 8994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427732920684240