Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq6467 156 6e-33 >seq6467 Length=13775 Score = 156 bits (172), Expect = 6e-33 Identities = 457/687 (67%), Gaps = 18/687 (3%) Strand=Plus/Minus Query 69896 CCTCTGTTGACGACCAAGACTGTCTT-TGTCAAGGGCGTCATCGAGGAGCTCTTGTGGAT 69954 || ||| |||| || ||| ||| || | || ||| ||| |||||| || ||||| | Sbjct 9401 CCGCTGCTGACCACGAAGCGTGTATTCTTTCGAGG-CGTGGCCGAGGAACTGCTGTGGTT 9343 Query 69955 GATTTCCGGATCGACCAATGCCAAAGAGCTG-AGCCGAAAGGGTGTACACATTTGGAGCG 70013 ||| |||| |||| ||||||| || || | |||| || ||||| ||| | Sbjct 9342 CATTGCCGGCAAGACCGATGCCAAGATATTGCAGGC-AAAGAAAGTCCACATATGGGATG 9284 Query 70014 GCAACAGTAGTCGAAGCGTTT-TGGATTCGCT-CGGCTTCACCGACAGACAAGAGGGCGA 70071 ||||| | || | |||| |||| ||| |||| |||||| | | || || Sbjct 9283 CTAACAGCACGCGC-GAGTTTCTGGACA-GCTGCGGCCACACCGAACGGGCTGTCGGGGA 9226 Query 70072 TCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGA 70131 |||||| ||||| || |||||||||||| | |||| ||| || ||||| ||||| Sbjct 9225 TCTGGGTCCAGTTTATGGATTCCAGTGGCGTCACTTTGGCGCCGAGTATCGCACTTGCGA 9166 Query 70132 -GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTCTCAAG 70189 ||| || || | || |||||| |||| ||||| || |||| | || | || | Sbjct 9165 TGAC-GATTACACCGGCCAGGGTATTGACCAATTACA-ACAAGTGATACATACGATTCGA 9108 Query 70190 ACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAA 70249 || ||||| | ||| | | || | |||| | | |||||||| ||| | | | || Sbjct 9107 ACTAATCCCTCGGATCGTCGCATTATCATGTCCGCCTGGAATCCGATGGATATACCCAAA 9048 Query 70250 ATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTA---CTCGTA---CGATGGCAAA 70303 ||||| ||||| ||||| || || | | |||||| | |||| | | | ||| || Sbjct 9047 ATGGCGCTACCGCCGTGCCATTGCCTAGTTCAGTTCTTTGTCTCGCAGTCCAAGGGCGAA 8988 Query 70304 TTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATT 70363 ||||| ||| | |||||| | ||||| |||||||||||||| || ||||| |||||| Sbjct 8987 TTGTCCTGCCAGCTATATCAGCGCAGTGCTGACATGGGCCTCGGCGTTCCCTTCAACATT 8928 Query 70364 GCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAG 70423 || ||| || || | || | | || || || | || || ||||| | ||| Sbjct 8927 GCCTCCTACGCTCTGCTCACCTATTTAATAGCCCATGTGACGGGTCTGAAGCCCGGCGAA 8868 Query 70424 TTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTG 70483 ||| | |||||||| ||||| |||||||| ||| | || || || || || | || | Sbjct 8867 TTCATCCACACCATAGGCGATGCTCACGTTTATCTCAACCATATAGAACCGCTGGAGCAG 8808 Query 70484 CAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAAT 70543 || | |||| || | || ||||||||||| | || || | ||| |||| Sbjct 8807 CAGATAAAACGTAGCCCCAAGCCCTTTCCCAAGCTCAACATTAAGCGCCAGGTTACAAAT 8748 Query 70544 ATTGACAGTTTTAAGTACGAAGATTTT 70570 ||||| ||| ||||||||| || Sbjct 8747 ATTGAGGACTTTCGCTACGAAGATCTT 8721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740982657847880