Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq5882 129 5e-25 >seq5882 Length=26048 Score = 129 bits (142), Expect = 5e-25 Identities = 188/261 (72%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298 ||| || ||||| || || | ||||| || ||||| || ||||| || |||| || Sbjct 23285 TCCAGTTGAACCAAAACCTGCCTCGCCTCGCTCGGTATCATCCAATTTGTCGACCTGTTC 23226 Query 5299 AA-CTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAA 5357 | || | | || |||||||| ||||| || | ||||| || | || || ||| | Sbjct 23225 CAGCTCCGGAATG-GATATGCGCTCGCAAATGAATTGAGCAATGCGATCACCGCGCTTGA 23167 Query 5358 CCTCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTC 5415 ||||||||||| ||| ||||| ||||||| || || || | || |||||||| || Sbjct 23166 CCTCAAAGTCGGTGT--CCGAATGATTAAACAAGACAACACCCAAGTTACCTCGGTAATC 23109 Query 5416 TTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGG 5475 ||||| | ||||||||||||||||||||| |||| || || || || |||||||| || Sbjct 23108 CTCGTCAACAACGCCAGCGCCCACGTCGATGAAGTTCTTCACGGCCAGACCGGAACGAGG 23049 Query 5476 TGCTATGCGTCCGTAGCAACC 5496 || | | || ||| |||| Sbjct 23048 CGCCACTCTGCCATAGGAACC 23028 Score = 116 bits (128), Expect = 3e-21 Identities = 199/287 (69%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 5239 TCCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTG 5298 ||| || ||||| || || | ||||| || ||||| || ||||| || |||| || Sbjct 23765 TCCAGTTGAACCAAAACCCGCCTCGCCACGCTCGGTATCATCCAATTTGTCCACCTGTTC 23706 Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358 | |||| | | ||||| ||||| || | ||| || || | ||||| ||| || Sbjct 23705 CAGCTCTGGATAGAAGATGCGCTCGCAAATGAACTGTGCAATGCGATCTCCGCGCTTGAC 23646 Query 5359 CTCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416 |||||||||| ||| ||||| ||||||| || || || | || || |||||||| Sbjct 23645 CTCAAAGTCGGTGT--CCGAATGATTAAACAAGACAACACCCAGGTTACCACGGTAGTCC 23588 Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476 ||||| | ||| || || || ||||||||||||| || || || | |||||||| || Sbjct 23587 TCGTCAACAACTCCGGCACCTACGTCGATAAAGTTCTTCACGGCCAAACCGGAACGGGGA 23528 Query 5477 GCTATGCGTCCGTAGCAACCAGGTGGGAGCTTTATCAGAAGGTCAGT 5523 || | | || ||| | || ||| |||| | | |||| ||||| Sbjct 23527 GCCACTCTGCCATAGGAGCCCTCTGGCAGCTGCACCTGAAGATCAGT 23481 Score = 100 bits (110), Expect = 3e-16 Identities = 181/260 (70%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTC-TTG 5298 || || ||||| || || | ||||| || ||||| || ||||| || ||||| || Sbjct 24244 CCAGTTGAACCAAAACCCGCCTCGCCACGCTCGGTATCATCCAACTTGTCCACCTCCTTT 24185 Query 5299 AACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAAC 5358 || | || | | || | ||||| || | |||||| || | ||||| ||| || Sbjct 24184 GGCTCC-GGATAGAAGATAAGCTCGCAAATGAACTGAGCAATGCGATCTCCGCGCTTGAC 24126 Query 5359 CTCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCT 5416 |||||||||| || |||||| ||||||| || || || | || || |||||||| Sbjct 24125 CTCAAAGTCG--GTGTCCGAATGATTAAACAAGACAACACCCAGGTTACCGCGGTAGTCC 24068 Query 5417 TCGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGT 5476 ||||| | ||| || || ||||| ||||| |||| || || || || |||||||| || Sbjct 24067 TCGTCCACAACACCGGCACCCACATCGATGAAGTTCTTCACGGCCAGACCGGAACGGGGG 24008 Query 5477 GCTATGCGTCCGTAGCAACC 5496 || | | || ||| |||| Sbjct 24007 GCCACTCTGCCATAGGAACC 23988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447704152980560