Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq5882 120 3e-22 >seq5882 Length=26048 Score = 120 bits (132), Expect = 3e-22 Identities = 200/283 (71%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 5508 TGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCCACAT 5567 || ||| || |||||| |||| | || ||||| |||| |||||| ||||| | Sbjct 23759 TGAACCAAAACCCGCCT-CGCCACGCTCGGTATCATCCAATTTGTCCACCTGTTCCAGCT 23701 Query 5568 CGGGGAACGCAGC-GCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCG 5626 | || | | || ||||||||| || | ||| || || || || || ||| ||||| Sbjct 23700 CTGGATA-GAAGATGCGCTCGCAAATGAACTGTGCAATGCGATCTCCGCGCTTGACCTCA 23642 Query 5627 AAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGT 5684 || ||| ||| ||||| || |||| || || |||| ||| || |||||||| ||| Sbjct 23641 AAGTCGGTGT--CCGAATGATTAAACAAGACAACACCCAGGTTACCACGGTAGTCCTCGT 23584 Query 5685 CTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCA 5744 | | || || || || |||||||| |||| ||| || |||| ||||| |||||||||| Sbjct 23583 CAACAACTCCGGCACCTACGTCGATAAAGTTCTTCACGGCCAAACCGGAACGGGGAGCCA 23524 Query 5745 CGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 | | ||| ||| | || || || ||||| | ||| || || || Sbjct 23523 CTCTGCCATAGGAGCCCTCTGGCAGCTGCACCTGAAGATCAGT 23481 Score = 118 bits (130), Expect = 9e-22 Identities = 203/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCC-GCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 || || || || || || || |||| |||||| || ||||| |||| | |||| Sbjct 23287 ACTCCAGTTGAACCAAAACCTGCCT-CGCCTCGCTCGGTATCATCCAATTTGTCGACCTG 23229 Query 5560 TTCCACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 ||||| || || | | ||||||||| || | || || || || || || ||| Sbjct 23228 TTCCAGCTCCGGAATGGATATGCGCTCGCAAATGAATTGAGCAATGCGATCACCGCGCTT 23169 Query 5620 TACCTCGAAATCGTTGTGGCCGAAG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 ||||| || ||| ||| ||||| || |||| || || |||| ||| || ||||| Sbjct 23168 GACCTCAAAGTCGGTGT--CCGAATGATTAAACAAGACAACACCCAAGTTACCTCGGTAA 23111 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || |||| | ||||| ||||||||||||||||||| ||| || ||||| ||||| || Sbjct 23110 TCCTCGTCAACAACGCCAGCGCCCACGTCGATGAAGTTCTTCACGGCCAGACCGGAACGA 23051 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || ||||| | ||| ||| | || || || | ||| | ||| || || || Sbjct 23050 GGCGCCACTCTGCCATAGGAACCCTCTGGCACCTGAACCTGGAGATCAGT 23001 Score = 116 bits (128), Expect = 3e-21 Identities = 151/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 5583 GCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGA 5642 ||||||| || | ||| || || || || || ||| ||||| || ||| ||| |||| Sbjct 24165 GCTCGCAAATGAACTGAGCAATGCGATCTCCGCGCTTGACCTCAAAGTCGGTGT--CCGA 24108 Query 5643 AG--TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCC 5700 | || |||| || || |||| ||| ||||||||||| |||| | || || || || Sbjct 24107 ATGATTAAACAAGACAACACCCAGGTTACCGCGGTAGTCCTCGTCCACAACACCGGCACC 24048 Query 5701 CACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCC 5760 ||| |||||||||| ||| || ||||| ||||| ||||| ||||| | ||| ||| | || Sbjct 24047 CACATCGATGAAGTTCTTCACGGCCAGACCGGAACGGGGGGCCACTCTGCCATAGGAACC 23988 Query 5761 ATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || || | ||| | ||| || || || Sbjct 23987 CTCTGGCACCTGAACCTGGAGATCAGT 23961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430011091237256