Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4921 93.3 4e-14 seq134 93.3 4e-14 seq5580 86.0 5e-12 >seq4921 Length=55175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | || || || | |||||||||||||| ||| | Sbjct 52289 CTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAA 52231 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || |||||||||||||| || | || ||| ||||| ||||| ||||| | Sbjct 52230 AGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACAT 52171 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | | ||||| || | | ||| ||| | || ||||| || |||||||| ||||||| Sbjct 52170 TCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCA 52111 Query 48714 CAAAAATCTGCAT 48726 |||| || ||||| Sbjct 52110 CAAAGATTTGCAT 52098 >seq134 Length=44313 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || |||||| || |||||||| || | ||| || | ||||||||||| Sbjct 29481 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTG 29540 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || |||||||||||||| || | || ||||||||| || || Sbjct 29541 CTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTT 29600 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | | |||||||||| | |||| ||| | || ||||| || || || Sbjct 29601 GGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGT 29660 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| Sbjct 29661 CAAGGTCTTGACGAAGATCTGCAT 29684 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || |||||| || |||||||| || | ||| || | ||||||||||| Sbjct 29104 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGCTG 29163 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || |||||||||||||| || | | ||||||||| || || Sbjct 29164 CTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTT 29223 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | | |||||||||| | |||| ||| | || ||||| || || || Sbjct 29224 GGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGT 29283 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| Sbjct 29284 CAAGGTCTTGACGAAGATCTGCAT 29307 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | ||| || | |||||||||||||| ||| || | Sbjct 28888 CTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCCTCCAGCTGCTTGCCGGCGAA 28947 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || |||||||||||||| || | | ||||||||| || || ||| | | Sbjct 28948 GATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATT 29007 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | |||||||||| | |||| ||| | || ||||| || || || | || || || Sbjct 29008 CTCGATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGAC 29067 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 29068 GAAGATCTGCAT 29079 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || | ||| |||||| || |||||||| || | ||| || | ||||| Sbjct 29703 CACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTC 29762 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || || | || |||||||||||||| || | || ||||||||| Sbjct 29763 CAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 29822 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||| | | | | |||||||||| | |||| ||| | || ||||| || Sbjct 29823 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 29882 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || || || || |||||||| Sbjct 29883 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 29912 >seq5580 Length=51276 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| ||||| | ||| ||| || || || ||||| |||| || || || | || | Sbjct 19545 CACCAAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAGA-AAGGGTGCGACCATCTT 19487 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || || |||| |||||||||||||| || | | ||| |||||| Sbjct 19486 CCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCT 19427 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || || | | | | |||||||| | | || ||| | || ||||| | Sbjct 19426 GGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCT 19367 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 |||| ||||| ||||| |||||||| |||||||| Sbjct 19366 TACCCGTGAGGGTTTTTACAAAAATTTGCATCGT 19333 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421208777766263