Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5624 172 9e-39 seq5625 100 4e-17 >seq5624 Length=85504 Score = 172 bits (190), Expect = 9e-39 Identities = 199/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| || |||||||||| | | || ||||| ||||| || ||||| || |||||||| Sbjct 84765 CGCCAAACGTCATCGCAAAGTGTTGCGTGATAATATCCAGGGCATCACGAAACCAGCTAT 84706 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| | |||||||||||||| || || ||| | ||||| | | ||||| || | Sbjct 84705 CCGCCGTTTAGCTCGTCGTGGTGGCGTTAAACGTATTTCTGGTCTTATTTATGAGGAAAC 84646 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| | ||| | ||| | ||| ||||||| |||||| || || || || Sbjct 84645 TCGTGGTGTTCTAAAGGTTTTCTTGGAGAATGTTATCCGTGATGCGGTCACATACACTGA 84586 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| ||||| |||||||| | || ||||| ||||| | ||||| Sbjct 84585 GCACGCCAAGAGGAAGACAGTCACAGCCATGGATGTTGTTTATGCGCTGAAAAGGCAAGG 84526 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || |||||||| ||||| Sbjct 84525 CCGTACCCTATACGGTTTTGGCGGTTAA 84498 >seq5625 Length=2420 Score = 100 bits (110), Expect = 4e-17 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| | ||||| | | ||||| || | ||||| |||| | ||| | ||| | || Sbjct 2420 AAACGTATTTCTGGTCTTATTTATGAGGAAACTCGTGGTGTTCTAAAGGTTTTCTTGGAG 2361 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||||| |||||| || || ||||||||||| || | ||||| || || || Sbjct 2360 AATGTTATCCGTGATGCGGTCACATACACCGAGCACGCCAAGAGGAAGACAGTTACAGCC 2301 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| ||||| | |||||||||| | || |||||||| ||||| Sbjct 2300 ATGGATGTTGTTTATGCGCTGAAAAGGCAAGGCCGTACCCTATACGGTTTTGGCGGTTAA 2241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067645081259