Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq138 149 4e-31 >seq138 Length=13430 Score = 149 bits (164), Expect = 4e-31 Identities = 165/216 (76%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 |||| |||| | || || || || | || ||||| ||||| |||||||| |||||| Sbjct 8586 ATGGCGACCGTCAATGTGAACCGCAGCGTAACGGACATCTTCTATCGCTACAAGATGCCG 8527 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 || ||| | |||||||||||||| ||||| ||||| || ||||| ||| | ||||||| Sbjct 8526 CG--TCTACAGGCCAAGGTCGAGGGCAAGGGCAACGGCATCAAAACGGTCCTGGTCAACA 8469 Query 6280 TGCCTGAAGTCGCTAAGGCGC--TCGGACGCCCTGCCACCTACCCGACGAAATATTTCGG 6337 || | ||||| || | |||| |||| ||||| |||||||| ||||| || || || || Sbjct 8468 TGGCCGAAGTGGC--ACGCGCCATCGGCCGCCCGGCCACCTATCCGACCAAGTACTTTGG 8411 Query 6338 GTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 || || || ||||| || |||||||| ||||| || Sbjct 8410 CTGTGAGCTGGGCGCCCAAACGCAGTTCGATCATAA 8375 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 ||||| || ||||| || || ||||||||| | | |||||||||||| | || || Sbjct 8231 AACGAACGTTTCATTGTGAATGGATCGCATGATGTTAACAAGCTGCAGGATCTGCTCGAT 8172 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 |||||||| ||||| ||||||||||||| ||||||||||| ||||||||| | | | Sbjct 8171 GGCTTTATACGCAAATTTGTGCTGTGTCCCGAATGCGATAATCCGGAGACCAATTTGACC 8112 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAAG 6554 || || |||||| | |||||||| || ||||| || ||||| | ||||| | Sbjct 8111 GTCTCGGCCAAGAATCAGACCATCTCGCAATCGTGCAAGGCCTGCGGCTTTCATGGTCTG 8052 Query 6555 CTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602 || | | || ||| ||||||| | ||| |||||||||| ||| Sbjct 8051 CTCAAGGTCAATCATAAAGTCAACACGTACATTGTGAAGAATCCACCA 8004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334913469037553