Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5580 114 1e-20 seq4921 111 1e-19 >seq5580 Length=51276 Score = 114 bits (126), Expect = 1e-20 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| |||||||| || | || ||||| ||||||| | || || || || Sbjct 19333 ACGATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCG 19392 Query 25056 TCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 || || || |||||| | || |||| || | || ||||||||||| ||||| || Sbjct 19393 TCGGATACCATCGAG--AATGTTAAAGCCAAGATCCAG-GACAAAGAAGGAATTCCTCCA 19449 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | ||||| || ||||| || | ||||||| |||||| | || Sbjct 19450 GATCAGCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTTTCTGAC 19509 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || ||||| ||||| | ||||| ||||| Sbjct 19510 TACAATATCCAGAAAGAGTCCACTTTGCATTTGGTGCT 19547 >seq4921 Length=55175 Score = 111 bits (122), Expect = 1e-19 Identities = 156/218 (72%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 |||| ||||||||| ||||| || || | ||||| || ||||||| | || || ||| Sbjct 52093 GGAA-AATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAG 52151 Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 | |||||||| |||||| | ||| |||||| ||||||||||| |||||||| Sbjct 52152 CCCTCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCA 52211 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 || || ||||| | || ||||||||||| || | || |||| ||||| | || Sbjct 52212 GATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGAC 52271 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || | || || ||||| Sbjct 52272 TACAACATCCAGAAGGAGTCGACTTTGCACTTGGTGCT 52309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433284361568345