Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4921 134 1e-26 seq5580 123 2e-23 seq134 116 3e-21 >seq4921 Length=55175 Score = 134 bits (148), Expect = 1e-26 Identities = 172/236 (73%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 ||| ||| |||||||| ||||| ||||| | ||||| || || |||| | || || | Sbjct 52091 TTGGAAA-ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCG 52149 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | || | || ||| | || || |||| ||||| |||||||| || |||||||||| Sbjct 52150 AGCCCTCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCAC 52209 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | ||||| || ||| | || ||||||||||| ||| | |||||| ||||||| | || | Sbjct 52210 CAGATCAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGG 52269 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | |||||||| || || || || || | || || || |||| |||| || ||| Sbjct 52270 ACTACAACATCCAGAAGGAGTCGACTTTGCACTTGGTGCTGCGTCTGCGTGGTGGT 52325 >seq5580 Length=51276 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||||||||| ||||| | || ||||| || |||||||||| || ||| | | Sbjct 19335 GATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTC 19394 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 |||||| | || || | ||| || || || ||||| || || ||||| || ||||| Sbjct 19395 GGATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCA 19454 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || ||| | || || || ||||| ||| | || ||| |||||| | || || ||||| Sbjct 19455 GCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTTTCTGACTACAA 19514 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| ||||| | ||||| || | || |||| || || Sbjct 19515 TATCCAGAAAGAGTCCACTTTGCATTTGGTGCTCCGCCTGCGTGGTGG 19562 >seq134 Length=44313 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| | || ||||| | || Sbjct 29079 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29020 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || || ||||||||||| ||||| || ||||| Sbjct 29019 GATACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 28960 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || |||||||| ||| | |||||| || ||| | ||||| |||||| Sbjct 28959 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACCTTGTCCGACTACAAC 28900 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || || || || ||||| | || || ||| |||| |||| || |||| Sbjct 28899 ATCCAGAAGGAGTCCACTTTGCACTTGGTTCTGCGTCTGCGTGGCGGTT 28851 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || || || || || || || || || || |||| | || ||||| | Sbjct 29916 AAATATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCC 29857 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 |||||||| | || || | || || || || ||||||||||||||||| || || Sbjct 29856 ATCCGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGA 29797 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 ||| || ||| | || || || ||||| ||||| |||||| |||||| | ||||| || Sbjct 29796 TCAGCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTA 29737 Query 22395 CAACATTCAAAAAGAATCCAC 22415 |||||| || || || ||||| Sbjct 29736 CAACATCCAGAAGGAGTCCAC 29716 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| | || ||||| | || Sbjct 29684 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29625 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || || ||||||||||||||||| || ||||| Sbjct 29624 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 29565 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || |||||||| ||| | |||||| || || | ||||| |||||| Sbjct 29564 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 29505 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | ||| | ||| | || |||| || || Sbjct 29504 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGG 29458 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || || || || |||| | || ||||| | || Sbjct 29307 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29248 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || || || || ||||||||||| ||||| || ||||| Sbjct 29247 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 29188 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || |||||||| ||| | |||||| || || | ||||| |||||| Sbjct 29187 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 29128 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | ||| | ||| | || |||| || || Sbjct 29127 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGG 29081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419685731160595