Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5580 95.1 1e-14 seq4921 86.0 5e-12 >seq5580 Length=51276 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | | || ||||| | || || ||||| || || ||||| || Sbjct 19562 CCACCACGCAGGCGGAGCACCAAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAGAA 19503 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || ||| |||||| || || || |||||| | || | |||||| || || |||||| Sbjct 19502 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGA 19443 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 || ||||||||||| ||||| ||| | | || | ||| || | | |||||| Sbjct 19442 ATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACC 19383 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || || || || |||||||||||||| ||||| Sbjct 19382 TCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 19336 >seq4921 Length=55175 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || || || | || || || || || |||||||| || Sbjct 52327 ATACCACCACGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCC 52268 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || || || || |||| | |||||| || || || Sbjct 52267 GAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGT 52208 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| || || || | | || | |||||| | || ||| Sbjct 52207 GGAATACCTTCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCG 52148 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || |||||||| || ||||| ||||| || ||||| Sbjct 52147 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTGCAT 52098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420092090233956