Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5580 118 3e-21 seq134 113 1e-19 >seq5580 Length=51276 Score = 118 bits (130), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||| | ||| ||||| |||||||| ||||| | Sbjct 19562 CCACCACGCAGGCGGAGCACCAAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAGAA 19503 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || || ||||| |||| |||||| ||| ||||| Sbjct 19502 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGA---TCTGGA 19446 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| |||||||| || ||||| || || || || | ||| || ||| Sbjct 19445 GGAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCG 19386 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || || || || || || ||||| Sbjct 19385 ACCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 19336 >seq134 Length=44313 Score = 113 bits (124), Expect = 1e-19 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| | |||||||| || || || || || || |||||| Sbjct 29722 TCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCAGCGAAG 29781 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| || || || || |||||||| || || || || Sbjct 29782 ATCAAACGCTGCTGA---TCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACA 29838 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || |||| |||||| Sbjct 29839 TTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTG 29898 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 29899 ACGAAGATCTGCAT 29912 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || ||||||| || || || ||||| || |||| Sbjct 29077 CATG-CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGT 29135 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | || ||||| || || | || || || |||||||||| |||||| ||| | Sbjct 29136 CGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGA---T 29192 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || || |||||||| || || || || || || || | |||| | Sbjct 29193 CTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATG 29252 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 29253 GCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29307 Score = 111 bits (122), Expect = 4e-19 Identities = 167/235 (71%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | || || ||||||| || || || ||||| || |||| Sbjct 29454 CATG-CCACCACGCAGACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGT 29512 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | || ||||| || || | || || || |||||||||| |||||| ||| | Sbjct 29513 CGGACAAAGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGA---T 29569 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| || || || || |||||||| || || || || || || || | |||| | Sbjct 29570 CTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATG 29629 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || |||| ||||||||||| |||||||| Sbjct 29630 GCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29684 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| | || ||||| || || | || || || |||||| Sbjct 28889 TCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAG 28948 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| |||||| ||| |||||| || || || || |||||||| || || || || Sbjct 28949 ATCAAACGCTGCTGA---TCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACA 29005 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || | ||||| ||||| || |||| |||||| Sbjct 29006 TTCTCGATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTG 29065 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 29066 ACGAAGATCTGCAT 29079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179529510357314