Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4921 138 3e-27 seq5580 136 9e-27 seq134 125 2e-23 >seq4921 Length=55175 Score = 138 bits (152), Expect = 3e-27 Identities = 167/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | |||||||||||| |||| ||||||||| | | || Sbjct 52318 CGCAGACGCAGCACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTG 52259 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||| ||||| | ||||||||| || || ||| ||| Sbjct 52258 CGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCT 52199 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || || || ||| || |||| |||||| | | || || ||||| Sbjct 52198 TCTTTGTCTTGGATTTTAGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAG 52139 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| ||||| || ||||| ||||||||||| ||||| |||||| Sbjct 52138 GTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATTTG---CATTTT 52095 >seq5580 Length=51276 Score = 136 bits (150), Expect = 9e-27 Identities = 147/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 199432 AGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCC 199491 ||| ||||| || |||| |||||||||| | || | ||||||||||||||||| || Sbjct 19533 AGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCCAGCTGCTTGCC 19474 Query 199492 GGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTT 199551 ||||| || | ||||||||| || ||| |||||||||| ||||| ||||| || Sbjct 19473 AGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTT 19414 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || |||| ||| || | | ||| || || | ||||| |||||||||||||| || Sbjct 19413 AACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGT 19354 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||||||||| Sbjct 19353 TTTTACAAAAATTTG 19339 >seq134 Length=44313 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || ||||||||||| |||| ||||||||| | |||||| | |||||| Sbjct 29096 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCC 29155 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| | ||||||||| || || ||| || || ||| Sbjct 29156 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 29215 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||| || | || || || ||||| ||||| ||| Sbjct 29216 TGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTC 29275 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 29276 TTGCCAGTCAAGGTCTTGACGAAGATCTG 29304 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || ||||||||||| |||| ||||||||| | |||||| | |||||| Sbjct 29473 AGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCC 29532 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| | ||||||||| || || ||| || || ||| Sbjct 29533 TCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCC 29592 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | ||| || | || || || ||||| ||||| ||| Sbjct 29593 TGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTC 29652 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 29653 TTGCCAGTCAAGGTCTTGACGAAGATCTG 29681 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | ||| |||||||| |||| ||||||||| | ||| || Sbjct 28859 CGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTA 28918 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| ||||||||||| ||||||||||| | ||||||||| || || ||| || Sbjct 28919 CGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCC 28978 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| || |||| ||| || | || || || ||||| Sbjct 28979 TCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCCACCTCCAAG 29038 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || || || Sbjct 29039 GTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTG 29076 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| |||||| |||| |||||| | |||||| |||| |||||| ||||||| Sbjct 29178 ATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATCCAGAAG 29119 Query 200998 GAGTCTACTCTTCACCTTGTT 201018 ||||| || ||||| || ||| Sbjct 29118 GAGTCGACCCTTCATCTGGTT 29098 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| |||||| |||| |||||| | |||||| |||| |||||| ||||||| Sbjct 29555 ATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAACATCCAGAAG 29496 Query 200998 GAGTCTACTCTTCACCTTGTT 201018 ||||| || ||||| || ||| Sbjct 29495 GAGTCGACCCTTCATCTGGTT 29475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178796787938621