Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4921 149 6e-31 seq5580 132 5e-26 seq134 122 9e-23 >seq4921 Length=55175 Score = 149 bits (164), Expect = 6e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || || ||||| ||||| ||||| ||||||||| | || |||||| || Sbjct 52095 AAAATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCC 52154 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | ||||||| |||||||| || ||||| | || Sbjct 52155 TCTGACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAT 52214 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | || ||||| |||||||| || | |||||||| |||||| Sbjct 52215 CAGCAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTAC 52274 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| |||| |||| |||||||||||| || | || || Sbjct 52275 AACATCCAGAAGGAGTCGACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 52324 >seq5580 Length=51276 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || |||||||| |||||||| || |||||||| | || ||||| | | Sbjct 19336 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 19395 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||||| || |||| |||||||| |||||||| | || || Sbjct 19396 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 19455 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| |||||||| || | |||||||| |||||||| Sbjct 19456 CAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTTTCTGACTACAAT 19515 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||||||||||| || || | || ||| Sbjct 19516 ATCCAGAAAGAGTCCACTTTGCATTTGGTGCTCCGCCTGCGTGGTGGC 19563 >seq134 Length=44313 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| | || Sbjct 29079 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29020 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || |||| ||||| ||||| |||||| | || || Sbjct 29019 GATACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 28960 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| |||||||| || | || ||| | |||||||||| Sbjct 28959 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACCTTGTCCGACTACAAC 28900 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || |||| ||||| |||||| || | ||||| Sbjct 28899 ATCCAGAAGGAGTCCACTTTGCACTTGGTTCTGCGTCTGCGTGGCGG 28853 Score = 122 bits (134), Expect = 9e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || | || ||||| ||||||||| | || || ||| | Sbjct 29916 AAATATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCC 29857 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||| | | | | | |||| | || |||| ||||| ||||| |||||| | || Sbjct 29856 ATCCGATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGA 29797 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| | || | ||| ||||| ||| |||| || | |||||| | |||||| Sbjct 29796 TCAGCAGCGTTTGATCTTCGCTGGCAAGCAGTTGGAGGATGGACGCACCTTGTCCGACTA 29737 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || |||| |||||||| ||| || | || ||| Sbjct 29736 CAACATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTGCGTGGTGGC 29685 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| | || Sbjct 29307 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29248 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || |||| ||||| ||||| |||||| | || || Sbjct 29247 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 29188 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| |||||||| || | || || | |||||||||| Sbjct 29187 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 29128 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| |||| || ||| |||| || ||| || | || ||| Sbjct 29127 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGC 29080 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| ||||||||| | || || ||| | || Sbjct 29684 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29625 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| | || |||| ||||| ||||| |||||| | || || Sbjct 29624 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 29565 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | ||| ||||| |||||||| || | || || | |||||||||| Sbjct 29564 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 29505 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| |||| || ||| |||| || ||| || | || ||| Sbjct 29504 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGGC 29457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500121138401920