Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq5580 141 2e-28 seq4921 129 1e-24 seq134 127 5e-24 >seq5580 Length=51276 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 |||||||||||| || |||||||| || | ||| || | |||||||| |||||||| || Sbjct 19533 AGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCCAGCTGCTTGCC 19474 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 ||||| || | || || || ||||||||||| ||||||||||| || || || || Sbjct 19473 AGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGGATCTTGGCTTT 19414 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || ||||| ||||| ||||| ||| || ||||| || | ||||| || || | || Sbjct 19413 AACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTACCCGTGAGGGT 19354 Query 195123 TTTTACGAACACTTGCAT 195140 |||||| || | |||||| Sbjct 19353 TTTTACAAAAATTTGCAT 19336 >seq4921 Length=55175 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| | ||| ||||| || || || ||||| || | ||| || | ||||| || ||||| Sbjct 52301 GTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCCAGCTG 52242 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | || || || ||||| ||||| |||||||||||||| ||||| Sbjct 52241 CTTGCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTT 52182 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| ||||| |||||||| || || || || | ||| | ||||| || || Sbjct 52181 AGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGT 52122 Query 195117 CAAAGTTTTTACGAACACTTGCATTT 195142 | ||||| || || | |||||||| Sbjct 52121 GAGGGTTTTCACAAAGATTTGCATTT 52096 >seq134 Length=44313 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| || ||||| || || || ||||| |||| | ||| | ||||| || Sbjct 29098 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 29157 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| | || || || ||||| |||||||| || ||||| || Sbjct 29158 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 29217 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || ||||||||||| || || ||||| || | ||| | ||||| Sbjct 29218 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 29277 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 29278 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 29307 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| || ||||| || || || ||||| |||| | ||| | ||||| || Sbjct 29475 AACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTC 29534 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| | || || || ||||| ||||| || || ||||| || Sbjct 29535 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 29594 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || ||||||||||| || || ||||| || | ||| | ||||| Sbjct 29595 GATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTT 29654 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | ||||| Sbjct 29655 GCCAGTCAAGGTCTTGACGAAGATCTGCAT 29684 Score = 114 bits (126), Expect = 3e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 ||| | ||||||||| || || || ||||| |||| |||| || | ||||| || | || Sbjct 29709 GTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAG-GTGCGTCCATCCTCCAACT 29767 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || |||||||| | || || || ||||| ||||| || || ||||| || || | Sbjct 29768 GCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCT 29827 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | ||| || ||||||||||| || || ||||| || | ||| | ||||| || | Sbjct 29828 TGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAG 29887 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 |||| || || ||||| | ||||| Sbjct 29888 TCAAGGTCTTGACGAAGATCTGCAT 29912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109364139529721