Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq4921 104 2e-17 seq134 87.8 1e-12 >seq4921 Length=55175 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || || ||||| ||||| |||||||||||| | || |||| ||| Sbjct 52306 ACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCC 52247 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || | || ||||| ||| | || | || || ||||| Sbjct 52246 AGCTGCTTGCCGGCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGG 52187 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 || || ||||| || || || | ||| || ||| || || | ||| ||||| | Sbjct 52186 ATTTTAGCCTTGAC--ATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCT 52129 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 | || ||||| || ||||||||||| ||||| ||| Sbjct 52128 TGCCGGTGAGGGTTTTCACAAAGATTTGCATTTTC 52094 >seq134 Length=44313 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||||||| | ||| || ||||| ||||| ||||| || | | | ||| |||| Sbjct 28867 CAGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCATC 28926 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || ||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 28927 CTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC 28986 Query 34889 GCTAATCTTCTGTTTGAC-----GGATGCTATCGATTCACCGGCCTCAACATCGACGGTT 34943 ||||| || || |||| ||||| | | ||| || || | ||| Sbjct 28987 CTGGATCTTGGCCTTAACATTCTCGATGGTATCGGAT-----GGCTCCACCTCCAAGGTG 29041 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || || || | ||||| || ||||||||||| Sbjct 29042 ATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324600907671864