Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5580 87.8 1e-11 >seq5580 Length=51276 Score = 87.8 bits (96), Expect = 1e-11 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATG--AAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTC 563314 || ||||| || | ||| ||| | ||| | | ||| |||||||| |||| || || | Sbjct 19553 AGGCGGAGCACCAAATGCAAAGTGGACTCTTTCTGG--ATATTGTAGTCAGAAAGGGTGC 19496 Query 563315 TTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTT 563374 |||||| || || || || || ||||| | | |||||||| ||||||||||||| Sbjct 19495 GACCATCTTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCTT 19436 Query 563375 CTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC--AGTGTGAGTACATTCGAG 563432 |||| || || || || ||| || ||| || ||||| | || | || || || Sbjct 19435 CTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCG-AC-CTCAAG 19378 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| | || ||||| || || ||||| || ||||||||||| Sbjct 19377 AGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCAT 19336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028859015293870