Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq5580 122 7e-23 seq4921 113 4e-20 seq134 107 2e-18 >seq5580 Length=51276 Score = 122 bits (134), Expect = 7e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| | || || ||||| || |||||||| || | | || | |||| ||| Sbjct 19544 ACCAAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAGAAAGGGTGCGACCATCTTCC 19485 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| || || || ||||||||||| ||||| || ||||| |||||||| || || Sbjct 19484 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGG 19425 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | || || |||| ||| || |||||||||| || || Sbjct 19424 ATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTA 19365 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || || | ||||||||||| || ||||| || Sbjct 19364 CCCGTGAGGGTTTTTACAAAAATTTGCATCGT 19333 >seq4921 Length=55175 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || || || || ||||| || | | || | | |||| |||| ||||| || Sbjct 52294 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCATCCTCCAGCTGCTTGCCG 52235 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 ||||| ||||||||||| ||||| || ||||| |||||||| ||||| ||||| || Sbjct 52234 GCAAAGATCAAACGCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGGATTTTAGCCTTG 52175 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | |||||||| | || || || | |||| || |||||||| | ||| Sbjct 52174 ACATTCTCGATGGTGTCAGAGGGCTCGACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTT 52115 Query 101453 TTTACAAATATCTGCAT 101469 || ||||| || ||||| Sbjct 52114 TTCACAAAGATTTGCAT 52098 >seq134 Length=44313 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||||||| || || || || || ||||| |||| | ||| | | Sbjct 29092 ACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCC 29151 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||||| || || || ||||||||||| ||||| || |||||||| || || Sbjct 29152 ATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 29211 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | || || || | ||||| || | |||| Sbjct 29212 GTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGAT 29271 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || || || || ||||||||| Sbjct 29272 GGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 29308 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| | ||||||||| || || || || || ||||| |||| | ||| | | Sbjct 29469 ACGGAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCC 29528 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||||| || || || ||||||||||| ||||| || ||||| || || || Sbjct 29529 ATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTT 29588 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | || || || | ||||| || | |||| Sbjct 29589 GTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGAT 29648 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || || || || ||||||||| Sbjct 29649 GGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 29685 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| || || | || || || || || || ||||| |||| | || | | Sbjct 28864 ACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCC 28923 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| |||| ||||| || || || ||||||||||| ||||| || |||||||| || || Sbjct 28924 ATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTT 28983 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | || || || | ||||| || | |||| Sbjct 28984 GTCCTGGATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCCACCTCCAAGGTGAT 29043 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || || || || || ||||||||| Sbjct 29044 GGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCATG 29080 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 101273 GTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCT 101332 || || || || || || ||||| |||| | || | |||| ||||| ||||| || Sbjct 29716 GTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGTCCATCCTCCAACTGCTTGCCA 29775 Query 101333 GCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTT 101392 || || ||||||||||| ||||| || ||||| || || || || || || || || Sbjct 29776 GCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTA 29835 Query 101393 ACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTT 101452 ||| | || | || || || | ||||| || | |||| || ||||| || || || Sbjct 29836 ACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGTC 29895 Query 101453 TTTACAAATATCTGCAT 101469 || || || |||||||| Sbjct 29896 TTGACGAAGATCTGCAT 29912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396238492659891