Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5882 129 4e-25 seq5580 107 1e-18 seq134 95.1 9e-15 >seq5882 Length=26048 Score = 129 bits (142), Expect = 4e-25 Identities = 199/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 9082 TCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATGA 9141 || ||||| ||||||||||| | || || || || ||||||| ||||| |||||| Sbjct 23203 TCGCAAATGAATTGAGCAATGCGATCACCGCGCTTGACCTCAAAGTCGGTGTCCGAATGA 23144 Query 9142 TTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCACG 9201 || |||| || || |||| |||||| | ||||||||| || | || ||||| |||||| Sbjct 23143 TTAAACAAGACAACACCCAAGTTACCTCGGTAATCCTCGTCAACAACGCCAGCGCCCACG 23084 Query 9202 TCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCATCCCACC 9261 |||||||||| ||| || || || || || || ||||| | || || ||| | ||| | Sbjct 23083 TCGATGAAGTTCTTCACGGCCAGACCGGAACGAGGCGCCACTCTGCCATAGGAACCCTCT 23024 Query 9262 GGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTTGCCGTGTTTTGGAATCACGGTG 9321 || | || ||| | | || ||| |||| | ||||||| | |||| | | | Sbjct 23023 GGCACCTGAACCTGGAGATCAGTCTTGACAATAGCCTTGCCACGGGCCGGAACTATGAGG 22964 Query 9322 TCGTAGCCGCTCTTGAGATCAAACCCAGCTGCCCTGTCCGATCC 9365 |||||| |||| | ||||| || || || | || ||||| Sbjct 22963 TCGTAGGCGCTGCGCAAGTCAAAGCCGGCGGCTCGTTCAGATCC 22920 >seq5580 Length=51276 Score = 107 bits (118), Expect = 1e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||| || | || || | ||||||||| | ||| |||||| || |||||||| |||| Sbjct 19564 CGCCACCACGCAGGCGGAGCACCAAATGCAAAGTGGACTCTTTCTGGATATTGTAGTCAG 19505 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | || | ||| | || |||| |||||| || || || |||| ||||| ||||| | | Sbjct 19504 AAAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCTGGAG 19445 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 ||| || || ||||| ||||| ||| ||| | | | || |||| || | Sbjct 19444 GAATTCCTTCTTTGTCCTGGATCTTGGCTTTAACATTCTCGATGGTATCCGACGGTTCGA 19385 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 |||| | || || || || ||||| | |||||||||||||| |||||||| Sbjct 19384 CCTCAAGAGTGATGGTCTTACCCGTGAGGGTTTTTACAAAAATTTGCATCGT 19333 >seq134 Length=44313 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || |||| ||||| || | ||| ||| || || || ||||| || || Sbjct 28853 CCGCCACGCAGACGCAGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 28912 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || |||| |||||| ||||| || |||| ||||| ||||| | |||| Sbjct 28913 AAGGTACGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 28972 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || | ||||||| Sbjct 28973 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTATCGGATGGCTCCACC 29032 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || ||||| || || || || |||||||| Sbjct 29033 TCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29079 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || ||||| || || | | | || | || ||| Sbjct 29099 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCC 29158 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || |||| ||||| ||||| | ||||| |||||||||||| Sbjct 29159 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGG 29218 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||||| || || || || Sbjct 29219 ATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTG 29278 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || || |||||||| Sbjct 29279 CCAGTCAAGGTCTTGACGAAGATCTGCAT 29307 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || ||||| || || | | | || | || ||| Sbjct 29476 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAAAGTACGTCCATCCTCC 29535 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || |||| ||||| ||||| | ||||| ||||||||||| Sbjct 29536 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 29595 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||||| || || || || Sbjct 29596 ATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTGATGGTCTTG 29655 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || || |||||||| Sbjct 29656 CCAGTCAAGGTCTTGACGAAGATCTGCAT 29684 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || | ||| ||| || || || ||||| || || | | || Sbjct 29695 AGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGT 29754 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || || || |||| ||||| ||||| | ||||| |||||| Sbjct 29755 CCATCCTCCAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCC 29814 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||||||||||| || Sbjct 29815 TTGTCCTGGATCTTGGCCTTAACATTCTCAATGGTATCGGATGGCTCCACCTCCAAGGTG 29874 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || || || |||||||| Sbjct 29875 ATGGTCTTGCCAGTCAAGGTCTTGACGAAGATCTGCAT 29912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380899237559949