Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20americana_20[genbank_20GCA_5F001245395.1_202015-10-02] 8,263 sequences; 58,684,694 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq4921 172 7e-38 seq846 172 7e-38 seq5580 158 2e-33 seq134 150 2e-31 seq6717 105 9e-18 >seq4921 Length=55175 Score = 172 bits (190), Expect = 7e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||||||||||||||| || || || || |||||| | ||||| ||| | || Sbjct 52098 ATGCAAATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGCCCTCT 52157 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| || || || ||||| || ||||| |||||||| |||||| Sbjct 52158 GACACCATCGAGAATGTCAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAG 52217 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || ||||| || || ||||| || ||||| || ||||| | || |||||| Sbjct 52218 CAGCGTTTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAAC 52277 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| ||| | ||| | || || | || || |||||| Sbjct 52278 ATCCAGAAGGAGTCGACTTTGCACTTGGTGCTGCGTCTGCGTGGTGGT 52325 >seq846 Length=34594 Score = 172 bits (190), Expect = 7e-38 Identities = 428/642 (67%), Gaps = 21/642 (3%) Strand=Plus/Plus Query 195356 CGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTT 195415 || || |||||||| | || || || || ||||| | || || || || || |||||| Sbjct 20071 CGCGTTGAGATTATTGCCAACGATCAGGGTAACCGCATCACGCCCTCCTATGTGGCCTTT 20130 Query 195416 ACAGATAATG---AACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAG-CTATGAACCC 195471 || | ||| | ||||| |||| |||||||| || ||||| || | | | || || Sbjct 20131 ACGGCCGATGGCGAGCGTCTGATTGGTGATGCCGCCAAGAATCA-ACTGACCACAAATCC 20189 Query 195472 TATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGT 195531 ||||| |||||||| ||||| ||||| ||||| ||| | | || |||| ||| || Sbjct 20190 CGAAAATACCGTCTTTGATGCGAAACGTCTGATTGGACGCGAATGGTCCGATACGAATGT 20249 Query 195532 CCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGG--CTGATAAGCCT 195589 || ||||||| || || | | |||| ||| | | | || ||||| Sbjct 20250 GCAGCACGATATCAAATTCTTCCCATTCAAAGTGGTT----GAGAAGAACTCG-AAGCCA 20304 Query 195590 ATGATTAATGTTGA---ATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCG 195646 || | ||| || || || || | |||| ||||| ||||| || || || Sbjct 20305 CACATCAGTGTCGATACATCGCAGGGCGCCAAGATC---TTTGCGCCCGAGGAGATCTCC 20361 Query 195647 TCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAA 195706 | ||||| || ||||||||||| || || ||| | | |||| || | || | Sbjct 20362 GCCATGGTTCTGGGCAAGATGAAGGAAACCGCCGAAGCCTATCTGGGCAAGAAGGTCACC 20421 Query 195707 GATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGAC 195766 | || ||||| ||||| || || ||||||| ||| | || || |||||||| ||||| Sbjct 20422 CACGCTGTTGTCACTGTGCCCGCCTACTTCAACGATGCCCAGCGCCAGGCGACCAAGGAT 20481 Query 195767 GCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCA 195826 || | || ||||| ||||| | | | || |||||||| || ||||||||||| Sbjct 20482 GCGGGTGTCATTGCCGGTCTGCAGGTGATGCGCATCATCAATGAGCCGACAGCGGCTGCC 20541 Query 195827 ATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTC 195886 ||||| || |||||||||||| ||||| | || || ||||| | | || ||| | Sbjct 20542 ATTGCATACGGTCTGGACAAG---AAGGAGGGCGAGAAGAATGTGCTCGTTTTCGATTTG 20598 Query 195887 GGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAG 195946 || || || || || |||||||| || || | || || ||| | ||||| || Sbjct 20599 GGCGGCGGCACCTTCGATGTCTCCCTGCTGACCATCGACAATGGCGTCTTCGAGGTGGTT 20658 Query 195947 GCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGAT 195988 || || ||||| |||||| | ||||| || || || ||| Sbjct 20659 GCCACCAACGGTGACACTCATTTGGGTGGCGAGGACTTTGAT 20700 Score = 127 bits (140), Expect = 3e-24 Identities = 327/491 (67%), Gaps = 14/491 (3%) Strand=Plus/Plus Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||| || ||||| || || || || ||||| ||||| ||||||| | ||||| || Sbjct 21085 ATCAATCCCGATGAGGCTGTCGCCTACGGTGCCGCCGTCCAGGCTGGCGTACTCTCCGGC 21144 Query 196433 GTTGACAATAATAACGTCCAAGATC-TTCTGCTACTTGATGTTGCACCCGTATCCCTGGG 196491 | | | | | | | ||| ||||||| ||||| || | || |||| Sbjct 21145 GAACAGGACACGGATGCC----ATCGTTCTGCTC---GATGTCAATCCATTGACCATGGG 21197 Query 196492 TCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGAC 196551 |||| || | || ||||| ||||| ||| | ||| | |||||| ||||| || Sbjct 21198 CATTGAGACCGTCGGCGGTGTCATGACCAAACTGATTCCACGTAACACAGTCATTCCCAC 21257 Query 196552 TAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCA--GGTGTTCATATTCAA 196609 ||||| || || || || ||| ||||| ||||| | |||| ||| ||| Sbjct 21258 CAAGAAATCGCAGGTGTTCTCCACGGCATCCGACAATCAGCATACGGTGACCAT--TCAG 21315 Query 196610 GTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGGAACTTTCGATTT 196668 || || || || || || ||| || | |||||||||||| | || || | |||||||| Sbjct 21316 GTGTACGAGGGCGAGCG-TCCGATGACCAAGGATAACCATTTGCTGGGCAAATTCGATTT 21374 Query 196669 GACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGA 196728 ||| || ||||| | ||||| | || | |||||||| | || | |||||| || || Sbjct 21375 GACCGGCATTCCGCCAGCACCACGTGGCATACCACAGATCGAGGTATCCTTCGAGATTGA 21434 Query 196729 CGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGAT 196788 || || || ||||| | |||| || |||||||||| | ||||| || ||||| Sbjct 21435 TGCCAACGGCATTCTGCAGGTCAGCGCCGAGGACAAGGGCACCGGCAACAAGGAGAAGAT 21494 Query 196789 TGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGA 196848 |||||| ||||| || || || | | ||||| || || || ||| | || || Sbjct 21495 TGTGATCACCAACGATCAGAACCGTTTGACGCCCGAGGATATCGATCGCATGATCCACGA 21554 Query 196849 TGCGGAAAAGT 196859 ||| || |||| Sbjct 21555 TGCCGAGAAGT 21565 >seq5580 Length=51276 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| |||||||| || || || || ||||| || ||||| || |||| Sbjct 19336 ATGCAAATTTTTGTAAAAACCCTCACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCG 19395 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | ||||||||||| || || || ||||| ||||| || |||||| Sbjct 19396 GATACCATCGAGAATGTTAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAG 19455 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | ||||| ||||| || ||||| |||||||| || ||||| |||| ||||| Sbjct 19456 CAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTTTCTGACTACAAT 19515 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | || || ||||| ||| | || | || || | || || ||||| || Sbjct 19516 ATCCAGAAAGAGTCCACTTTGCATTTGGTGCTCCGCCTGCGTGGTGGCGC 19565 >seq134 Length=44313 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||| | ||||| || || |||||| | ||||| ||| | || Sbjct 29079 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29020 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || | || |||||||| || || ||||| |||||||| || |||||| Sbjct 29019 GATACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 28960 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| || |||||||||||| | | || |||||| Sbjct 28959 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACCTTGTCCGACTACAAC 28900 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | || |||||||| ||| | ||| | ||||| | || || || ||| Sbjct 28899 ATCCAGAAGGAGTCCACTTTGCACTTGGTTCTGCGTCTGCGTGGCGGT 28852 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||| | ||||| || || |||||| | ||||| ||| | || Sbjct 29307 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29248 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || |||||||| || || ||||| |||||||| || |||||| Sbjct 29247 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 29188 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| || ||||||||||| | | || |||||| Sbjct 29187 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 29128 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || || || ||||| | || || ||||| Sbjct 29127 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGG 29081 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||| | ||||| || || |||||| | ||||| ||| | || Sbjct 29684 ATGCAGATCTTCGTCAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCATCC 29625 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || |||||||| || || ||||| || ||||| || |||||| Sbjct 29624 GATACCATTGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 29565 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| || ||||||||||| | | || |||||| Sbjct 29564 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTACTTTGTCCGACTACAAC 29505 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || || || ||||| | || || ||||| Sbjct 29504 ATCCAGAAGGAGTCGACCCTTCATCTGGTTCTCCGTCTGCGTGGTGG 29458 >seq6717 Length=26621 Score = 105 bits (116), Expect = 9e-18 Identities = 246/358 (69%), Gaps = 16/358 (4%) Strand=Plus/Minus Query 181869 CCAGTTCCAATACCCTCACTTCCATTGACCAAGATCATGGGTATAGTAGGCATATAGAAC 181928 ||||| || || ||||| ||||| |||| | |||||||||| | || ||||| | Sbjct 991 CCAGTGCCGATGCCCTCGGCGCCATTCACCAGTACCATGGGTATAATGGGAATATACCAA 932 Query 181929 TCTGGTTCAATAGAGC-GACCATCATCATCCAAATAATTAAGAATAGCATCATCCTTGGG 181987 ||| ||||| | || |||||||||| || ||| | || | | ||||||| || Sbjct 931 ATTGGCTCAAT-GCGCTGACCATCATCCACCTGATACTGCAGCAGGGGATCATCCAACGG 873 Query 181988 ATCAAAAATTTTACG----AGCCTCGGATGTCAGTCGTGTGAAGATATATCTCGT-CTGG 182042 || | | || ||| ||| || | ||| | ||||| ||||| | | || | Sbjct 872 ATGATAGATGAGACGTGTTAGCGGCG-ACATCAAT---GTGAAAATATAACGAGCGCTCG 817 Query 182043 CTAGCATCCTTACCACCCAAAAGCCGTGTTCCAAATTGACCACATGGTTCGAGAAGATTG 182102 | || |||||| ||||| || ||||| || || ||||| | || || | | |||| Sbjct 816 C-AGAATCCTTGCCACCAGTGAGACGTGTACCGAACTGACCGCGCGGCTCCAACAAATTG 758 Query 182103 ATATTGTTAGATCCTGTGTAATCATTCGCCAATTTCACAATTGT-ATCAGCGAGGGATAC 182161 |||||||| || || ||| | ||||| |||||||| || ||| || ||||| | Sbjct 757 ATATTGTTTGAGCCCACAAAATTCTGTGCCAAATTCACAATGGTCATCTGC-AGGGACAT 699 Query 182162 TTCACCGTGATGATAGGCAGACTTTTCAGCCA-CAAAGGCGGCAAGTTGAGCAACTTT 182218 || |||||||||||||| ||| ||||||||| | || || ||| ||| || ||||| Sbjct 698 CTCGCCGTGATGATAGGCTGACATTTCAGCCACCGAACCCGACAA-TTGGGCCACTTT 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657794451037360